BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0011.p (201 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004194312.1| RNA-metabolising metallo-beta-lactamase [Des... 253 1e-65 ref|YP_003642178.1| RNA-metabolising metallo-beta-lactamase [Thi... 250 1e-64 ref|YP_003643153.1| RNA-metabolising metallo-beta-lactamase [Thi... 249 2e-64 ref|ZP_04956957.1| metallo-beta-lactamase family protein [gamma ... 248 3e-64 emb|CAZ88504.1| putative mRNA Cleavage and polyadenylation speci... 248 4e-64 >ref|YP_004194312.1| RNA-metabolising metallo-beta-lactamase [Desulfobulbus propionicus DSM 2032] gb|ADW17021.1| RNA-metabolising metallo-beta-lactamase [Desulfobulbus propionicus DSM 2032] Length = 462 Score = 253 bits (645), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 132/250 (52%), Positives = 164/250 (65%), Gaps = 49/250 (19%) Query: 1 MESTYGDRRHRSLKDSIEELYGAISGTLARGGNVIIPTFALERAQEILYVLRQGIERSRL 60 MESTYGDR H+ L+ SIEEL+ AI+ T+AR GNV+IP+FALER QE+LY LR+GIE+ RL Sbjct: 213 MESTYGDRLHKRLEPSIEELFQAINTTIARNGNVLIPSFALERTQELLYYLREGIEQQRL 272 Query: 61 PPAMQIFLDSPMAISX-------------------------------------------- 76 P +Q++LDSPMAIS Sbjct: 273 PRHLQVYLDSPMAISATQIFRRHRECFDEETWAVISAGQDPFELPGLEIIRDTTESMALK 332 Query: 77 -----VIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSVRLFG 131 VI+AGSGMCTGGRIRHHLRHN+WR+E+++VFVGYAA GT+AR+II+G + VR+ Sbjct: 333 HVRGAVIIAGSGMCTGGRIRHHLRHNLWRREASVVFVGYAAEGTLARRIIEGEEVVRVLQ 392 Query: 132 EDIAVRSKIYTINGFSAHADQQELLAWRRAIEGCEATFLVHGEEPAMQALAVHLEGQRVE 191 ED+ V ++IYTI GFSAHADQ+ELLAW E TFLVHGE+ AMQALA L +VE Sbjct: 393 EDVEVNAEIYTIGGFSAHADQRELLAWHGRTGSPERTFLVHGEQEAMQALASRLTDTKVE 452 Query: 192 LPRLGDVFDL 201 +P L + FDL Sbjct: 453 MPGLHESFDL 462 >ref|YP_003642178.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12] gb|ADG29848.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12] Length = 460 Score = 250 bits (638), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 132/251 (52%), Positives = 164/251 (65%), Gaps = 51/251 (20%) Query: 1 MESTYGDRRHRSLKDSIEELYGAISGTLARGGNVIIPTFALERAQEILYVLRQGIERSRL 60 ME+TYGDR H+ ++ SI EL+ AIS TL RGGNV+IPTFALERAQEIL+ LR+GIE +L Sbjct: 211 METTYGDRLHKPIEPSIAELFAAISETLKRGGNVVIPTFALERAQEILFYLREGIEAGKL 270 Query: 61 PPAMQIFLDSPMAISX-------------------------------------------- 76 P + +FLDSPMAIS Sbjct: 271 PRTLAVFLDSPMAISATEIFRHHPECYGNAIDALFRAGSDPFSLPGLRFTREAADSIALN 330 Query: 77 ------VIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSVRLF 130 VIMAGSGM TGGR+RHHLRHN+ R ES++VFVGYAA GT+AR +IDGAK V+LF Sbjct: 331 RLVGGAVIMAGSGMATGGRVRHHLRHNLGRHESSVVFVGYAARGTLARLLIDGAKKVKLF 390 Query: 131 GEDIAVRSKIYTINGFSAHADQQELLAWRRAIEGCEATFLVHGEEPAMQALAVHLEGQRV 190 GE+I V +++YTINGFSAHADQ+ELLAW++A++ E T LVHG+ +M A A L+ RV Sbjct: 391 GEEIPVHARLYTINGFSAHADQRELLAWQQALK-PEQTILVHGDPHSMDAFAALLKNTRV 449 Query: 191 ELPRLGDVFDL 201 + P+ GDV DL Sbjct: 450 QRPKQGDVIDL 460 >ref|YP_003643153.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12] gb|ADG30823.1| RNA-metabolising metallo-beta-lactamase [Thiomonas intermedia K12] Length = 460 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 131/251 (52%), Positives = 164/251 (65%), Gaps = 51/251 (20%) Query: 1 MESTYGDRRHRSLKDSIEELYGAISGTLARGGNVIIPTFALERAQEILYVLRQGIERSRL 60 ME+TYGDR H+ ++ SI EL+ AIS TL RGGNV+IPTFALERAQEIL+ LR+G+E +L Sbjct: 211 METTYGDRLHKPIEPSIAELFAAISETLKRGGNVVIPTFALERAQEILFYLREGLEAGKL 270 Query: 61 PPAMQIFLDSPMAISX-------------------------------------------- 76 P + +FLDSPMAIS Sbjct: 271 PRTLPVFLDSPMAISATEIFRHHPECYGNAIDALFRAGSDPFSLPGLRFTREAADSIALN 330 Query: 77 ------VIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSVRLF 130 VIMAGSGM TGGR+RHHLRHN+ R ES++VFVGYAA GT+AR +IDGAK V+LF Sbjct: 331 RLVGGAVIMAGSGMATGGRVRHHLRHNLGRHESSVVFVGYAARGTLARLLIDGAKKVKLF 390 Query: 131 GEDIAVRSKIYTINGFSAHADQQELLAWRRAIEGCEATFLVHGEEPAMQALAVHLEGQRV 190 GE+I V +++YTINGFSAHADQ+ELLAW++A++ E T LVHG+ +M A A L+ RV Sbjct: 391 GEEIPVHARLYTINGFSAHADQRELLAWQQALK-PEQTILVHGDPHSMDAFAALLKNTRV 449 Query: 191 ELPRLGDVFDL 201 + P+ GDV DL Sbjct: 450 QRPKQGDVIDL 460 >ref|ZP_04956957.1| metallo-beta-lactamase family protein [gamma proteobacterium NOR51-B] gb|EED34541.1| metallo-beta-lactamase family protein [gamma proteobacterium NOR51-B] Length = 436 Score = 248 bits (633), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 126/251 (50%), Positives = 160/251 (63%), Gaps = 50/251 (19%) Query: 1 MESTYGDRRHRSLKDSIEELYGAISGTLARGGNVIIPTFALERAQEILYVLRQGIERSRL 60 ME+TYGDR H+ L+ SI+ELY I+ TLARGGNVIIPTFALERAQEI+Y LR+G+E ++ Sbjct: 183 METTYGDRLHKQLQPSIDELYEVINETLARGGNVIIPTFALERAQEIIYYLREGVENGQI 242 Query: 61 PPAMQIFLDSPMAISX-------------------------------------------- 76 +FLDSPMAIS Sbjct: 243 KYYTNVFLDSPMAISATEIFERHPECFDNETLKLSADGSDCFAMPGLHFTRETAESMAIN 302 Query: 77 ------VIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSVRLF 130 VIMAGSGMCTGGR+RHHL+HN+W K++++VFVGYAA GT+AR+IIDGAK VR++ Sbjct: 303 QINGGAVIMAGSGMCTGGRVRHHLKHNLWGKQNSVVFVGYAANGTLARRIIDGAKKVRIY 362 Query: 131 GEDIAVRSKIYTINGFSAHADQQELLAWRRAIEGCEATFLVHGEEPAMQALAVHLEGQRV 190 GE+I V + ++TI GFSAHADQ ELLAW + + TFLVHGE+ +MQA A L +V Sbjct: 363 GEEINVNASVHTIGGFSAHADQAELLAWHKQTGNPKTTFLVHGEDSSMQAFAKQLNNTQV 422 Query: 191 ELPRLGDVFDL 201 E+P L ++L Sbjct: 423 EIPVLYQEYEL 433 >emb|CAZ88504.1| putative mRNA Cleavage and polyadenylation specificity factor [Thiomonas sp. 3As] Length = 460 Score = 248 bits (632), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 130/251 (51%), Positives = 163/251 (64%), Gaps = 51/251 (20%) Query: 1 MESTYGDRRHRSLKDSIEELYGAISGTLARGGNVIIPTFALERAQEILYVLRQGIERSRL 60 ME+TYGDR H+ ++ SI EL+ AIS TL RGGNV+IPTFALERAQEIL+ LR+G+E +L Sbjct: 211 METTYGDRLHKPIEPSIAELFAAISETLKRGGNVVIPTFALERAQEILFYLREGLEAGKL 270 Query: 61 PPAMQIFLDSPMAISX-------------------------------------------- 76 P + +FLDSPMAIS Sbjct: 271 PRTLPVFLDSPMAISATEIFRHHPECYGNAIDALFRAGSDPFSLPGLRFTREAADSIALN 330 Query: 77 ------VIMAGSGMCTGGRIRHHLRHNIWRKESAIVFVGYAAAGTIARQIIDGAKSVRLF 130 VIMAGSGM TGGR+RHHLRHN+ R ES++VFVGYAA GT+AR +IDGAK V+LF Sbjct: 331 RLVGGAVIMAGSGMATGGRVRHHLRHNLGRHESSVVFVGYAARGTLARLLIDGAKKVKLF 390 Query: 131 GEDIAVRSKIYTINGFSAHADQQELLAWRRAIEGCEATFLVHGEEPAMQALAVHLEGQRV 190 GE+I V +++YTINGFSAHADQ+ELLAW++A++ E T LVHG+ +M A L+ RV Sbjct: 391 GEEIPVHARLYTINGFSAHADQRELLAWQQALK-PEQTILVHGDPDSMDVFAALLKNTRV 449 Query: 191 ELPRLGDVFDL 201 + P+ GDV DL Sbjct: 450 QRPKQGDVIDL 460