BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0009.p (243 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001207210.1| hypothetical protein BRADO5312 [Bradyrhizobi... 335 3e-90 ref|YP_001241616.1| hypothetical protein BBta_5760 [Bradyrhizobi... 332 2e-89 ref|YP_533896.1| signal-transduction protein [Rhodopseudomonas p... 313 1e-83 ref|NP_772714.1| hypothetical protein blr6074 [Bradyrhizobium ja... 313 1e-83 ref|YP_780657.1| signal-transduction protein [Rhodopseudomonas p... 309 2e-82 >ref|YP_001207210.1| hypothetical protein BRADO5312 [Bradyrhizobium sp. ORS 278] emb|CAL78993.1| conserved hypothetical protein with CBS domain [Bradyrhizobium sp. ORS 278] Length = 242 Score = 335 bits (860), Expect = 3e-90, Method: Compositional matrix adjust. Identities = 156/240 (65%), Positives = 195/240 (81%) Query: 1 MYAHQIMARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIG 60 M AHQIM R V++ TPD++I+DAANIMLQ VSGLPVVD G LVG+++EGDF+ R+EIG Sbjct: 1 MRAHQIMTRPVITVTPDTSIVDAANIMLQRHVSGLPVVDASGKLVGVVSEGDFIRRTEIG 60 Query: 61 TGRKRNWLMTFILGPGKWAEDYVLEHGRKVSEIMTREPVTVAEDAPLTTVVGLMEKNNVK 120 TGRKR + FILGPGK A D+V EHGRKVSE+MTR P+T+ EDA L +V +MEKN+VK Sbjct: 61 TGRKRGRWLRFILGPGKSAADFVHEHGRKVSEVMTRSPLTITEDAALAEIVEIMEKNHVK 120 Query: 121 RLPVVRDGKLVGIITRSNLLRTVASLARNVPAPTENDDQIRRRILDEIERNAWCPLGLSV 180 RLPVV+ ++VGI++R+NLL+ VASL R VP PT +DD IR R++D +E+N WCP GLSV Sbjct: 121 RLPVVKGDQVVGIVSRANLLQAVASLGRQVPDPTADDDHIRDRVIDMMEKNDWCPFGLSV 180 Query: 181 IVQDGIAHLSGVITESRFRNAAIVAAENVPGVREVHDHLCWGDSFSGFYLKSPDDQELEK 240 IV+DGI HLSGVITE R R AA+VAAEN+ GVR+VHDHLCW D+ SG YL SP+D+++ K Sbjct: 181 IVKDGIVHLSGVITEERSRQAAVVAAENIAGVRKVHDHLCWVDTMSGMYLNSPEDEDMAK 240 >ref|YP_001241616.1| hypothetical protein BBta_5760 [Bradyrhizobium sp. BTAi1] gb|ABQ37710.1| hypothetical protein BBta_5760 [Bradyrhizobium sp. BTAi1] Length = 242 Score = 332 bits (852), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 153/240 (63%), Positives = 194/240 (80%) Query: 1 MYAHQIMARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIG 60 M AHQIM R V++ TPD++I++AANIMLQ VSGLPVVD G L+G+++EGDF+ R+EIG Sbjct: 1 MRAHQIMTRPVITVTPDTSIVEAANIMLQRHVSGLPVVDASGKLIGVVSEGDFIRRTEIG 60 Query: 61 TGRKRNWLMTFILGPGKWAEDYVLEHGRKVSEIMTREPVTVAEDAPLTTVVGLMEKNNVK 120 TGRKR + FILGPGK A D+V EHGRKVSE+MT+ P+T+ EDA L +V +MEKN+VK Sbjct: 61 TGRKRGRWLRFILGPGKSAADFVHEHGRKVSEVMTKSPLTITEDAALAEIVEIMEKNHVK 120 Query: 121 RLPVVRDGKLVGIITRSNLLRTVASLARNVPAPTENDDQIRRRILDEIERNAWCPLGLSV 180 RLPVV+ ++VGI++R+NLL+ VA+L R VP PT +DD IR R++D +E+N WCP GLSV Sbjct: 121 RLPVVKGDQVVGIVSRANLLQAVATLGRQVPDPTADDDHIRNRVIDNLEKNDWCPFGLSV 180 Query: 181 IVQDGIAHLSGVITESRFRNAAIVAAENVPGVREVHDHLCWGDSFSGFYLKSPDDQELEK 240 IV+DGI HLSGVITE R R AAIVA ENV GV++VHDHLCW D+ SG YL SP+D+E+ K Sbjct: 181 IVKDGIVHLSGVITEERSRQAAIVATENVAGVKKVHDHLCWVDTMSGMYLNSPEDEEMAK 240 >ref|YP_533896.1| signal-transduction protein [Rhodopseudomonas palustris BisB18] gb|ABD89577.1| putative signal-transduction protein with CBS domains [Rhodopseudomonas palustris BisB18] Length = 242 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 150/242 (61%), Positives = 190/242 (78%) Query: 1 MYAHQIMARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIG 60 M AHQIM R+V++ +PD++I+DAANIML VSGLPVV+ G L+GII+EGDF+ R+EIG Sbjct: 1 MRAHQIMTRQVVTVSPDASIVDAANIMLSQHVSGLPVVNAAGELIGIISEGDFIRRAEIG 60 Query: 61 TGRKRNWLMTFILGPGKWAEDYVLEHGRKVSEIMTREPVTVAEDAPLTTVVGLMEKNNVK 120 T RKR + +LGPG+ A D+V EHGRKV EIMT P TV +A + +V MEK++VK Sbjct: 61 TERKRGRWLRLLLGPGQSASDFVHEHGRKVGEIMTTHPHTVNAEATVAEIVKAMEKHHVK 120 Query: 121 RLPVVRDGKLVGIITRSNLLRTVASLARNVPAPTENDDQIRRRILDEIERNAWCPLGLSV 180 RLPV++DG++VGI+TR NLL+ VA+LAR+VPAP+E DD+IR R+ IE N W P GLSV Sbjct: 121 RLPVMQDGRMVGIVTRKNLLQAVANLARDVPAPSEADDKIRGRVTAAIEHNDWRPFGLSV 180 Query: 181 IVQDGIAHLSGVITESRFRNAAIVAAENVPGVREVHDHLCWGDSFSGFYLKSPDDQELEK 240 IV+DG+ HLSGVITE R R AAIVAAENV GV+EVHDHLCW D+ SGFYL SP+D ++ K Sbjct: 181 IVRDGVVHLSGVITEERSRKAAIVAAENVCGVKEVHDHLCWVDTMSGFYLNSPEDDQMSK 240 Query: 241 QV 242 + Sbjct: 241 AI 242 >ref|NP_772714.1| hypothetical protein blr6074 [Bradyrhizobium japonicum USDA 110] dbj|BAC51339.1| blr6074 [Bradyrhizobium japonicum USDA 110] Length = 242 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 158/240 (65%), Positives = 190/240 (79%) Query: 1 MYAHQIMARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIG 60 M AHQIM R V+S TPD++I++AANIML+ VSGL VVD G LVG+++EGDF+ RSEIG Sbjct: 1 MRAHQIMTRSVISVTPDTSIVEAANIMLKRHVSGLTVVDDTGKLVGVVSEGDFIRRSEIG 60 Query: 61 TGRKRNWLMTFILGPGKWAEDYVLEHGRKVSEIMTREPVTVAEDAPLTTVVGLMEKNNVK 120 TGRKR + FILGPGK A D+V EHGRKVSE+MT PVT+ ED L +V LME+NNVK Sbjct: 61 TGRKRGRWLRFILGPGKSASDFVHEHGRKVSEVMTASPVTITEDTALAEIVDLMERNNVK 120 Query: 121 RLPVVRDGKLVGIITRSNLLRTVASLARNVPAPTENDDQIRRRILDEIERNAWCPLGLSV 180 RLPVVR +VGI++R+NLL+ VA LAR VP PT +DD IR RI+D +ERN WCP GL+V Sbjct: 121 RLPVVRGDMVVGIVSRANLLQAVAGLAREVPDPTADDDHIRNRIIDTMERNDWCPFGLNV 180 Query: 181 IVQDGIAHLSGVITESRFRNAAIVAAENVPGVREVHDHLCWGDSFSGFYLKSPDDQELEK 240 IV+DGI HLSGVITE R R AA+VAAENV GV++VHDHLCW D+ SG YL SP+D +L K Sbjct: 181 IVRDGIVHLSGVITEERARQAAVVAAENVEGVKKVHDHLCWVDTMSGVYLNSPEDDDLAK 240 >ref|YP_780657.1| signal-transduction protein [Rhodopseudomonas palustris BisA53] gb|ABJ05677.1| putative signal-transduction protein with CBS domains [Rhodopseudomonas palustris BisA53] Length = 242 Score = 309 bits (792), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 147/240 (61%), Positives = 189/240 (78%) Query: 1 MYAHQIMARKVLSTTPDSAILDAANIMLQHRVSGLPVVDPDGTLVGIITEGDFLHRSEIG 60 M AHQIM V++ P+++I+DAANIML+ VSGLPVV+ G L+G+I+EGDF+ R+EIG Sbjct: 1 MRAHQIMTHDVVTVGPEASIVDAANIMLKQHVSGLPVVNDAGELIGVISEGDFIRRTEIG 60 Query: 61 TGRKRNWLMTFILGPGKWAEDYVLEHGRKVSEIMTREPVTVAEDAPLTTVVGLMEKNNVK 120 T RKR + +LGPG+ A D+V EHGRKVSEIMT P TV DA ++ +V MEK +VK Sbjct: 61 TERKRGRWLRLLLGPGQSASDFVHEHGRKVSEIMTSHPHTVQADATVSEIVKTMEKYHVK 120 Query: 121 RLPVVRDGKLVGIITRSNLLRTVASLARNVPAPTENDDQIRRRILDEIERNAWCPLGLSV 180 RLPV++DG++VGI+TR NLL+ VA+LAR+VPAP+ DD IR +++ EIERN W P GLSV Sbjct: 121 RLPVLQDGRMVGIVTRKNLLKAVANLARDVPAPSAADDAIRAQVVAEIERNDWRPFGLSV 180 Query: 181 IVQDGIAHLSGVITESRFRNAAIVAAENVPGVREVHDHLCWGDSFSGFYLKSPDDQELEK 240 +V++GI HLSGVITE R R A IVAAENV GV+EVHDHLCW D+ SGFYL SP+D+++ K Sbjct: 181 LVRNGIVHLSGVITEERSRKATIVAAENVSGVKEVHDHLCWVDTMSGFYLNSPEDEQIAK 240