BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0008.p         (123 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_772410.1| hypothetical protein bll5770 [Bradyrhizobium ja...   176   1e-42
ref|YP_004011261.1| alkylhydroperoxidase like protein [Rhodomicr...   169   1e-40
ref|YP_001205231.1| putative carboxymuconolactone decarboxylase ...   169   2e-40
ref|YP_001206550.1| putative carboxymuconolactone decarboxylase ...   166   9e-40
ref|YP_001239702.1| putative carboxymuconolactone decarboxylase ...   164   5e-39

>ref|NP_772410.1| hypothetical protein bll5770 [Bradyrhizobium japonicum USDA 110]
 dbj|BAC51035.1| bll5770 [Bradyrhizobium japonicum USDA 110]
          Length = 118

 Score =  176 bits (446), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 82/118 (69%), Positives = 102/118 (86%)

Query: 1   MQKDYADVCKHISNNLGQLRKGIPETMRAFSAMAQAATGNGALDARTKELIALALGVAAH 60
           M K+Y D+ ++IS NL +LR  IP+TM+ F+A+AQAAT +GALD +TKEL+ALALGVAAH
Sbjct: 1   MDKNYVDITRNISANLRKLRSDIPDTMKGFAALAQAATRDGALDKKTKELMALALGVAAH 60

Query: 61  CDGCIGFHAEALVKLGVGRKELEETLGLAVYMGGGPSLMYAADALGAYDLFQERAVVA 118
           CDGCIGFH EALVKLG  R+E+EETLG+AVYMGGGPSLMYAADA+ AY+ FQ+++V A
Sbjct: 61  CDGCIGFHTEALVKLGATREEIEETLGMAVYMGGGPSLMYAADAIAAYEQFQQQSVAA 118


>ref|YP_004011261.1| alkylhydroperoxidase like protein [Rhodomicrobium vannielii ATCC
           17100]
 gb|ADP70162.1| alkylhydroperoxidase like protein, AhpD family [Rhodomicrobium
           vannielii ATCC 17100]
          Length = 117

 Score =  169 bits (428), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 79/111 (71%), Positives = 97/111 (87%)

Query: 1   MQKDYADVCKHISNNLGQLRKGIPETMRAFSAMAQAATGNGALDARTKELIALALGVAAH 60
           M+KDYA++ + IS N+ +LRKGIPETM+ FSA+A AAT +G+LD +TKELIALALGVAA 
Sbjct: 1   MEKDYAEITRAISANMKELRKGIPETMQGFSALAAAATKDGSLDKKTKELIALALGVAAR 60

Query: 61  CDGCIGFHAEALVKLGVGRKELEETLGLAVYMGGGPSLMYAADALGAYDLF 111
           CDGCIGFH+EALV+LG  R+E+ E LG+A+YMGGGPSLMYAADA+GAYD F
Sbjct: 61  CDGCIGFHSEALVRLGATREEVLEVLGMAIYMGGGPSLMYAADAIGAYDQF 111


>ref|YP_001205231.1| putative carboxymuconolactone decarboxylase [Bradyrhizobium sp. ORS
           278]
 emb|CAL76996.1| putative carboxymuconolactone decarboxylase [Bradyrhizobium sp. ORS
           278]
          Length = 118

 Score =  169 bits (427), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/116 (67%), Positives = 98/116 (84%)

Query: 1   MQKDYADVCKHISNNLGQLRKGIPETMRAFSAMAQAATGNGALDARTKELIALALGVAAH 60
           M K Y+D+CK +S NL  LRK IP+ M+ FSA+A+AA  +GALD +TKELIALA+GVA  
Sbjct: 2   MTKLYSDICKDLSGNLKTLRKDIPDVMQGFSALARAAGADGALDKKTKELIALAIGVAVR 61

Query: 61  CDGCIGFHAEALVKLGVGRKELEETLGLAVYMGGGPSLMYAADALGAYDLFQERAV 116
           CDGCIGFHAEALV+LG  R+E+EETLG+A+YMGGGPSLMYAADA+GA++ FQ++A 
Sbjct: 62  CDGCIGFHAEALVRLGASRQEVEETLGMAIYMGGGPSLMYAADAIGAFEQFQQQAT 117


>ref|YP_001206550.1| putative carboxymuconolactone decarboxylase [Bradyrhizobium sp. ORS
           278]
 emb|CAL78330.1| conserved hypothetical protein; putative carboxymuconolactone
           decarboxylase [Bradyrhizobium sp. ORS 278]
          Length = 117

 Score =  166 bits (421), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 96/114 (84%)

Query: 1   MQKDYADVCKHISNNLGQLRKGIPETMRAFSAMAQAATGNGALDARTKELIALALGVAAH 60
           M K+Y ++CK IS NL  LRK IP+ M+ FSAMA+AA  +GALD +TKELIALA+GVA  
Sbjct: 1   MTKNYNEICKDISGNLKTLRKDIPDVMQGFSAMARAAGADGALDKKTKELIALAIGVAVR 60

Query: 61  CDGCIGFHAEALVKLGVGRKELEETLGLAVYMGGGPSLMYAADALGAYDLFQER 114
           CDGC GFHAEALV+LG  R+E+EETLG+A+YMGGGPSLMYAADA+GA++ FQ++
Sbjct: 61  CDGCTGFHAEALVRLGATRQEVEETLGMAIYMGGGPSLMYAADAIGAFEQFQQQ 114


>ref|YP_001239702.1| putative carboxymuconolactone decarboxylase [Bradyrhizobium sp.
           BTAi1]
 gb|ABQ35796.1| putative carboxymuconolactone decarboxylase [Bradyrhizobium sp.
           BTAi1]
          Length = 118

 Score =  164 bits (414), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 97/118 (82%)

Query: 1   MQKDYADVCKHISNNLGQLRKGIPETMRAFSAMAQAATGNGALDARTKELIALALGVAAH 60
           M K Y+++CK +S NL  LRK IP+ M+ FSA+A+AA  +GALD +TKELIALA+GVA  
Sbjct: 1   MTKLYSEICKDLSGNLKTLRKDIPDVMQGFSALARAAGADGALDKKTKELIALAIGVAVR 60

Query: 61  CDGCIGFHAEALVKLGVGRKELEETLGLAVYMGGGPSLMYAADALGAYDLFQERAVVA 118
           CDGCIGFHAEALV+LG  R+E+EETLG+A+YMGGGPSLMYAADA+ A++ FQ++   A
Sbjct: 61  CDGCIGFHAEALVRLGATRQEVEETLGMAIYMGGGPSLMYAADAIAAFEQFQQQTAAA 118