BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0005.p (226 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|NP_771284.1| hypothetical protein bll4644 [Bradyrhizobium ja... 234 6e-60 ref|YP_001239434.1| hypothetical protein BBta_3434 [Bradyrhizobi... 228 5e-58 ref|ZP_01045917.1| Universal stress protein, UspA [Nitrobacter s... 137 1e-30 ref|YP_577200.1| hypothetical protein Nham_1935 [Nitrobacter ham... 134 7e-30 ref|YP_317649.1| universal stress protein UspA [Nitrobacter wino... 126 2e-27 >ref|NP_771284.1| hypothetical protein bll4644 [Bradyrhizobium japonicum USDA 110] dbj|BAC49909.1| bll4644 [Bradyrhizobium japonicum USDA 110] Length = 273 Score = 234 bits (598), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 123/216 (56%), Positives = 149/216 (68%), Gaps = 36/216 (16%) Query: 1 MYLANVMVYVNPQQQDEGQVRVAEGIADKFHASLIGVSASAIDPPFVAEGVIIEQTTEDD 60 M +A+VMVYV+ +QQ+ GQV VAEGIA F A+++GVSA A++PPFVAEGVIIEQTTE+D Sbjct: 1 MSVASVMVYVDSEQQEAGQVAVAEGIARTFGAAILGVSAVAVEPPFVAEGVIIEQTTEED 60 Query: 61 IKRMRADLAAKGEWFRKITGRERHKVEWRWALESPTAFLAEQARAADLVVFKRRKVQSDN 120 IKR++A L+AK WF+++ G VEWRWAL+ PT FL EQARAADLV+ KRR + + Sbjct: 61 IKRIKATLSAKEAWFKRVVGLPSETVEWRWALDDPTDFLVEQARAADLVIVKRRSQAASH 120 Query: 121 FHYLDSAEAILRMGRPTLSVPEGVXVFKRRKAQSDNFHYLDSAEAILRMGRPTLSVPEGV 180 H+LD A A+LRMGRPTLS VPE V Sbjct: 121 SHFLDPAGAMLRMGRPTLS------------------------------------VPERV 144 Query: 181 TGLSADRIVVGWKDTREARLAIRDALPFLTRASKVT 216 T LS DRIVVGWKDTREARLA+RDA+PFLTRAS+VT Sbjct: 145 TELSGDRIVVGWKDTREARLAVRDAMPFLTRASQVT 180 >ref|YP_001239434.1| hypothetical protein BBta_3434 [Bradyrhizobium sp. BTAi1] gb|ABQ35528.1| hypothetical protein BBta_3434 [Bradyrhizobium sp. BTAi1] Length = 275 Score = 228 bits (581), Expect = 5e-58, Method: Compositional matrix adjust. Identities = 115/216 (53%), Positives = 150/216 (69%), Gaps = 36/216 (16%) Query: 1 MYLANVMVYVNPQQQDEGQVRVAEGIADKFHASLIGVSASAIDPPFVAEGVIIEQTTEDD 60 M +A VMVYV+P QQ EGQVR+A +AD+F ASLIGVSA A++PPFVAEGVII++TT DD Sbjct: 3 MTIATVMVYVDPDQQAEGQVRIARDVADRFGASLIGVSAFAVEPPFVAEGVIIKETTPDD 62 Query: 61 IKRMRADLAAKGEWFRKITGRERHKVEWRWALESPTAFLAEQARAADLVVFKRRKVQSDN 120 +KRM++ L+ K +WFR + G + +VEWRW++E PTAFL +AR+ADLVV +R + + D Sbjct: 63 LKRMKSALSDKEQWFRSVAGLPKERVEWRWSVEYPTAFLTNEARSADLVVIRRTQEKMDQ 122 Query: 121 FHYLDSAEAILRMGRPTLSVPEGVXVFKRRKAQSDNFHYLDSAEAILRMGRPTLSVPEGV 180 FH++D AEA++RMGRPTL VP+ V PT Sbjct: 123 FHFIDPAEAMMRMGRPTLLVPDHV---------------------------PT------- 148 Query: 181 TGLSADRIVVGWKDTREARLAIRDALPFLTRASKVT 216 LSADR++VGWKDTREAR+A+RDALPF + AS+VT Sbjct: 149 --LSADRVLVGWKDTREARIAMRDALPFFSSASQVT 182 >ref|ZP_01045917.1| Universal stress protein, UspA [Nitrobacter sp. Nb-311A] gb|EAQ36001.1| Universal stress protein, UspA [Nitrobacter sp. Nb-311A] Length = 273 Score = 137 bits (345), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 87/217 (40%), Positives = 113/217 (52%), Gaps = 38/217 (17%) Query: 1 MYLANVMVYVNPQQQDEGQVRVAEGIADKFHASLIGVSASAIDPPFVAEG-VIIEQTTED 59 M A +MV+VN + V VA +ADKF A LIG+SA A+ PPF+AEG VI++ TE Sbjct: 1 MSYATLMVWVNIDHVSKQFVGVAADVADKFAAHLIGLSAVAMVPPFIAEGVVIVDHATEF 60 Query: 60 DIKRMRADLAAKGEWFRKITGRERHKVEWRWALESPTAFLAEQARAADLVVFKRRKVQSD 119 DI + +A LA G + + GR R ++EWR A+ PT L +AR ADL+V + + D Sbjct: 61 DIDKTKATLAEAGSKVQAVVGRGR-QIEWRSAIAYPTETLISEARCADLIVIESGRSADD 119 Query: 120 NFHYLDSAEAILRMGRPTLSVPEGVXVFKRRKAQSDNFHYLDSAEAILRMGRPTLSVPEG 179 + D AIL GRP L VP V F Sbjct: 120 VYRSADVGAAILGAGRPFLVVPAAVKSF-------------------------------- 147 Query: 180 VTGLSADRIVVGWKDTREARLAIRDALPFLTRASKVT 216 +AD +++GWKDTREAR AI DALPFL A +VT Sbjct: 148 ----AADHVMIGWKDTREARRAILDALPFLHEAKRVT 180 >ref|YP_577200.1| hypothetical protein Nham_1935 [Nitrobacter hamburgensis X14] gb|ABE62740.1| UspA [Nitrobacter hamburgensis X14] Length = 272 Score = 134 bits (338), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 89/217 (41%), Positives = 115/217 (52%), Gaps = 39/217 (17%) Query: 1 MYLANVMVYVNPQQQDEGQVRVAEGIADKFHASLIGVSASAIDPPFVAEGV-IIEQTTED 59 M A +MV+V+ + VRVA G+ADKF A L+G+S AI PP VA GV I++ TE Sbjct: 1 MSYATLMVWVSVDDVSKQFVRVAVGVADKFGAKLLGLSTVAIMPPVVAGGVMIVDNATEF 60 Query: 60 DIKRMRADLAAKGEWFRKITGRERHKVEWRWALESPTAFLAEQARAADLVVFKRRKVQSD 119 DI +M+A LA G + G R +VEWR A+E PT L +AR ADL++ +R + D Sbjct: 61 DIAKMKASLAEAGNKVQAAAGVSR-RVEWRSAIEFPTLALIGEARCADLILVERDR-SGD 118 Query: 120 NFHYLDSAEAILRMGRPTLSVPEGVXVFKRRKAQSDNFHYLDSAEAILRMGRPTLSVPEG 179 + +D AIL GRP L VP Sbjct: 119 IYRTVDLGAAILGAGRP------------------------------------FLVVPAA 142 Query: 180 VTGLSADRIVVGWKDTREARLAIRDALPFLTRASKVT 216 V L+AD IV+GWKDTREAR A++DALPFL A +VT Sbjct: 143 VKSLAADHIVIGWKDTREARRAVQDALPFLHEAKRVT 179 >ref|YP_317649.1| universal stress protein UspA [Nitrobacter winogradskyi Nb-255] gb|ABA04297.1| Universal stress protein, UspA [Nitrobacter winogradskyi Nb-255] Length = 274 Score = 126 bits (317), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 82/217 (37%), Positives = 109/217 (50%), Gaps = 38/217 (17%) Query: 1 MYLANVMVYVNPQQQDEGQVRVAEGIADKFHASLIGVSASAIDPPFVAEGVI-IEQTTED 59 M A +MV+VN + V VA +ADKF A L+G+SA AI PPF A G++ + E Sbjct: 1 MSYATLMVWVNVDHVSKKFVGVAASLADKFDARLLGLSAVAIFPPFAAPGIVTVANAAEF 60 Query: 60 DIKRMRADLAAKGEWFRKITGRERHKVEWRWALESPTAFLAEQARAADLVVFKRRKVQSD 119 DI+ M+ L G + G R +VEWR A+ PT L +AR ADL+V + K+ D Sbjct: 61 DIENMKESLIDAGSIVQAAAGSAR-QVEWRSAIAFPTETLIGEARCADLIVVEGDKLSGD 119 Query: 120 NFHYLDSAEAILRMGRPTLSVPEGVXVFKRRKAQSDNFHYLDSAEAILRMGRPTLSVPEG 179 + LD AIL GRP L VP V Sbjct: 120 KYRNLDVGSAILGAGRPFLVVPAVVE---------------------------------- 145 Query: 180 VTGLSADRIVVGWKDTREARLAIRDALPFLTRASKVT 216 L+A+ +++GWKDTREAR A++DALPFL A +VT Sbjct: 146 --SLAAEHVMIGWKDTREARRAVQDALPFLHEAKRVT 180