BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0259.0018.p         (78 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF1369 [O] COG0298 Hydrogenase maturation factor Afu Archaeoglob...    63   2e-10
MK0227 [O] COG0298 Hydrogenase maturation factor Mka Methanopyru...    61   5e-10
asr0695 [O] COG0298 Hydrogenase maturation factor Nos Nostoc sp....    60   9e-10
jhp0836 [O] COG0298 Hydrogenase maturation factor jHp Helicobact...    60   2e-09
PAB7315 [O] COG0298 Hydrogenase maturation factor Pab Pyrococcus...    58   5e-09

>AF1369 [O] COG0298 Hydrogenase maturation factor Afu Archaeoglobus
          fulgidus
          Length = 77

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/72 (44%), Positives = 47/72 (65%), Gaps = 3/72 (4%)

Query: 1  MCLSVPAKISKI-LPDDMAIVSIDGVSLEISIALVEELDVGDNVLVHVGYALSKIDPTEA 59
          MC+++P +I +I  P  +AIV   G+  E+ I L+E   +GD VLVHVG A+ K+D  EA
Sbjct: 1  MCIAIPGRIERIDYP--IAIVDFKGLKKEVRIDLLENPQIGDYVLVHVGMAIQKVDEEEA 58

Query: 60 KRTLELLQELGS 71
          K+T ELL+ +  
Sbjct: 59 KKTWELLERVAD 70


>MK0227 [O] COG0298 Hydrogenase maturation factor Mka Methanopyrus
          kandleri AV19
          Length = 92

 Score = 61.2 bits (147), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 27/69 (39%), Positives = 49/69 (71%), Gaps = 1/69 (1%)

Query: 1  MCLSVPAKISKILPDDMAIVSIDGVSLEISIALVEELDVGDNVLVHVGYALSKIDPTEAK 60
          MCL++P +I + L  + A+V   GV  E+ ++L+E+++ GD V+VH G+A+ K+D  EA+
Sbjct: 1  MCLAIPGRIVE-LDGNRAVVDFGGVRQEVDVSLLEDVEEGDWVIVHTGFAIQKLDEEEAR 59

Query: 61 RTLELLQEL 69
           +LE+ +E+
Sbjct: 60 ASLEIWEEV 68


>asr0695 [O] COG0298 Hydrogenase maturation factor Nos Nostoc sp. PCC 7120
          Length = 82

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 32/79 (40%), Positives = 52/79 (65%), Gaps = 8/79 (10%)

Query: 1  MCLSVPAKISKI--LPDDMAIVSIDGVSLEISIALV------EELDVGDNVLVHVGYALS 52
          MCL +P +I++I  +   +AIV + GV  +++IA +       E  +GD VLVHVG+A++
Sbjct: 1  MCLGIPGQITEITDINHKLAIVDVGGVKRQVNIACIVDEQHPPEACLGDWVLVHVGFAMN 60

Query: 53 KIDPTEAKRTLELLQELGS 71
          +I+  EA  TL+LLQE+ +
Sbjct: 61 RINEQEAAETLKLLQEIAA 79


>jhp0836 [O] COG0298 Hydrogenase maturation factor jHp Helicobacter pylori
          J99
          Length = 78

 Score = 59.7 bits (143), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/78 (42%), Positives = 51/78 (65%), Gaps = 2/78 (2%)

Query: 1  MCLSVPAKISKILPDDMAIVSIDGVSLEISIALV-EELDVGDNVLVHVGYALSKIDPTEA 59
          MCL++P+K+  I  D++A++   GV  E S+ L+ E + VGD VL+H+GY +SKID  EA
Sbjct: 1  MCLAIPSKVIAI-NDNVALLETLGVQREASLDLMGESVKVGDYVLLHIGYVMSKIDEKEA 59

Query: 60 KRTLELLQELGSAGREPR 77
            ++EL QE+ +   E  
Sbjct: 60 LESIELYQEMIAKMNETH 77


>PAB7315 [O] COG0298 Hydrogenase maturation factor Pab Pyrococcus abyssi
          Length = 75

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 1/71 (1%)

Query: 1  MCLSVPAKISKILPDDMAIVSIDGVSLEISIALVEELDVGDNVLVHVGYALSKIDPTEAK 60
          MCL++P ++ +I  D++ IV   GV  E+ + L+ ++ VGD V+VH G+A+ K+D   AK
Sbjct: 1  MCLAIPGRVVEI-RDNVGIVDFGGVKREVRLDLLSDVKVGDYVIVHTGFAIEKLDEERAK 59

Query: 61 RTLELLQELGS 71
            LE   E+ S
Sbjct: 60 EILEAWDEVFS 70