BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0258.0035.p         (211 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll3525 [R] COG3576 Predicted flavin-nucleotide-binding protein ...   282   5e-76
AGpA816 [R] COG3576 Predicted flavin-nucleotide-binding protein ...   136   3e-32
all2799 [R] COG3576 Predicted flavin-nucleotide-binding protein ...    65   1e-10

>mll3525 [R] COG3576 Predicted flavin-nucleotide-binding protein
           structurally related to pyridoxine 5'-phosphate oxidase
           Mlo Mesorhizobium loti
          Length = 210

 Score =  282 bits (721), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 124/200 (62%), Positives = 160/200 (80%)

Query: 3   DGHSYASDVAFSPAVKAIQTRKGSRATYAEAEAHGGWRSEIDENLAGFLGEVNSFYLATA 62
           + H++ SDVAF+P VKAIQ RKGSR +YA  E  GGW++ +  +LA F+    S +L+TA
Sbjct: 2   NAHAFTSDVAFTPTVKAIQARKGSRQSYARVEERGGWQAVVTPDLAAFIAMQTSVFLSTA 61

Query: 63  SADGQPYIQHRGGPKGFLKVLDKHTIAFADYSGNRQFITQGNLSENAKAYIFVMDYAHRR 122
           + DGQPYIQHRGGP GFLKVLD+ TI FAD+SGNRQFITQGNL++N +A++F++DY  R+
Sbjct: 62  NGDGQPYIQHRGGPAGFLKVLDEKTIGFADFSGNRQFITQGNLADNPRAFLFLIDYMLRQ 121

Query: 123 RVKLWGEAKVVEDDPALTRALMPQGYRARPEQVILFKVAAWDTNCPQHIPQKFDAADVAA 182
           R+K+WG A+VVE+D  L   LMPQ Y+ RPEQVILF ++AWD NCPQHIPQ+F+AADVAA
Sbjct: 122 RIKIWGTARVVENDAELMAKLMPQDYKVRPEQVILFTISAWDANCPQHIPQRFEAADVAA 181

Query: 183 ALASRDQRIAELEAELAALK 202
           AL  RD+RI +LE E++ LK
Sbjct: 182 ALGERDRRIQQLEQEVSRLK 201


>AGpA816 [R] COG3576 Predicted flavin-nucleotide-binding protein
           structurally related to pyridoxine 5'-phosphate oxidase
           Atu Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 216

 Score =  136 bits (343), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 77/182 (42%), Positives = 105/182 (57%), Gaps = 15/182 (8%)

Query: 10  DVAFSPAVKAIQTRKGSRATYAEAEAHGGWRSEIDENL---------AGFLGEVNSFYLA 60
           D+A +P+V   Q   GS   +A   A G      DE           A F+ E + FYLA
Sbjct: 33  DIATTPSVAVAQQHYGSADQWARVAARGS----ADETAQSQHLGPAEAAFIRERDGFYLA 88

Query: 61  TASADGQPYIQHRGGPKGFLKVLDKHTIAFADYSGNRQFITQGNLSENAKAYIFVMDYAH 120
           + S    PY+Q+RGGP GFL  L    + FAD+ GNRQ+IT GN+S N +  +F+MDYAH
Sbjct: 89  SVSESCWPYVQYRGGPAGFLLPLGPTLLGFADFRGNRQYITTGNVSVNDRVSLFLMDYAH 148

Query: 121 RRRVKLWGEAKVVE--DDPALTRALMPQGYRARPEQVILFKVAAWDTNCPQHIPQKFDAA 178
           RRR+K++G  +V++  DD  L   L    Y AR E++IL  V A+D NCPQHI  +F  A
Sbjct: 149 RRRLKIFGHVRVIDANDDQELAARLTMPDYPARVERLILIAVEAYDWNCPQHITPRFTLA 208

Query: 179 DV 180
           ++
Sbjct: 209 EL 210


>all2799 [R] COG3576 Predicted flavin-nucleotide-binding protein
           structurally related to pyridoxine 5'-phosphate oxidase
           Nos Nostoc sp. PCC 7120
          Length = 299

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 1/130 (0%)

Query: 12  AFSPAVKAIQTRKGSRATYAEAEAHGGW-RSEIDENLAGFLGEVNSFYLATASADGQPYI 70
            F    K IQ R   +A     E    + R  + +    ++ + ++F++A+   +     
Sbjct: 132 VFFNCPKYIQIRHIEKAVIDAIEQPEAFTRDSLSDTNQLWITQADTFFIASYHPESGADA 191

Query: 71  QHRGGPKGFLKVLDKHTIAFADYSGNRQFITQGNLSENAKAYIFVMDYAHRRRVKLWGEA 130
            HRGG  GF++V++ + + F DYSGN  F T GNL+ N KA +  +D+     +++ G+A
Sbjct: 192 SHRGGFPGFIQVVNSNQLVFPDYSGNNMFQTFGNLNVNPKAGLLFIDFEKGHTLQITGKA 251

Query: 131 KVVEDDPALT 140
           +V+ D   LT
Sbjct: 252 QVIWDVARLT 261