BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0258.0008.p (262 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC3338 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ... 258 1e-68 CC0391 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ... 215 9e-56 RSp0227 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid... 205 7e-53 AGc2614 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid... 197 2e-50 YPO0537 [I] COG1022 Long-chain acyl-CoA synthetases (AMP-forming... 72 1e-12 >CC3338 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Ccr Caulobacter vibrioides Length = 621 Score = 258 bits (659), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 133/252 (52%), Positives = 170/252 (67%), Gaps = 5/252 (1%) Query: 8 VKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRG 67 V TG RI T +G+TET + T+W TERVGL+GLP PG++LK+ P GSKYE+R++G Sbjct: 373 VAETGHRIPLTTMYGATETQGITV-THWITERVGLVGLPLPGIQLKLAPSGSKYEVRVKG 431 Query: 68 VNVTPGYFGQPDLTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTGTFV 127 V GY P+ TA FDEEGFY +GDA FV+P+DP +G++F GRV EDFKL +GT+V Sbjct: 432 PTVAAGYHKDPERTAAAFDEEGFYKLGDAARFVDPDDPAKGLVFDGRVTEDFKLDSGTWV 491 Query: 128 HVGSLRTDAIAAATPVVHDALVAGQDREFIGLLCWPNLHACRQLVGNADASYEDVIRHPE 187 VG LR D +AA +P +HDA++ GQD+ FIG + WP+ LV AD + + Sbjct: 492 SVGVLRPDLVAACSPYIHDAVITGQDKAFIGAMLWPSPAGLAALV--ADPGPGTPLE--K 547 Query: 188 VVACLKKGLQAHNASTTGSSMRIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALVE 247 +VA LK L A NA+ GSS R+AR ++ EPPSID E+TDKGYINQR LERRA VE Sbjct: 548 LVAILKDRLAAFNAAAGGSSRRVARFTILTEPPSIDAGEITDKGYINQRCVLERRADRVE 607 Query: 248 KLYAGEPGDDVI 259 LYA PG+ V Sbjct: 608 ALYAKTPGEGVF 619 >CC0391 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Ccr Caulobacter vibrioides Length = 596 Score = 215 bits (547), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 111/257 (43%), Positives = 161/257 (62%), Gaps = 13/257 (5%) Query: 7 TVKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGS--KYELR 64 V+T GERI F G+G+TET PT+ +W R G++GLP PG +K+VP G K+E+R Sbjct: 351 AVRTVGERITFAAGYGATETGPTACNIHWLNARSGMVGLPTPGTAVKLVPAGEGGKFEIR 410 Query: 65 LRGVNVTPGYFGQPDLTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTG 124 ++G V+PGY QP+ TA+ FDE+GFY +GDA +PEDP G++F GR+VE+FKL +G Sbjct: 411 VKGPQVSPGYLDQPEATAQAFDEDGFYRLGDAARLADPEDPAAGLVFDGRLVENFKLASG 470 Query: 125 TFVHVGSLRTDAIAAATPVVHDALVAGQDREFIGLLCWPNLHACRQLVGNADASYEDVIR 184 TFV G+LR A++A VV DA+V G+ +E +GL+ + + A +L G+ +A Sbjct: 471 TFVAAGALRVAAVSAIGGVVSDAVVCGEGQEGVGLMLFLDAKAVERL-GSPEA------- 522 Query: 185 HPEVVACLKKGLQAHNASTTGSSMRIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAA 244 V A + + L NA+ G RIARA+++ P ELTDKGYINQ +RR Sbjct: 523 ---VRAAIVEALSRMNAAAKGGGGRIARALILDGAPDAASGELTDKGYINQALARDRRPK 579 Query: 245 LVEKLYAGEPGDDVIIL 261 +E+L+A P + V++ Sbjct: 580 ELERLFAETPDEGVMVF 596 >RSp0227 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Rso Ralstonia solanacearum Length = 624 Score = 205 bits (522), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 118/251 (47%), Positives = 153/251 (60%), Gaps = 3/251 (1%) Query: 12 GERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRGVNVT 71 GERI G G TETAP+ T T G IGLP PG E+K+V K E R +G +V Sbjct: 369 GERIRIMAGLGMTETAPSCTFTTGPVMMAGYIGLPAPGCEVKLVRVDGKLEARFKGPHVM 428 Query: 72 PGYFGQPDLTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTGTFVHVGS 131 PGY+ P+L A+ FDE+G+Y GDA FV+ P G++F GR+ EDFKL++GTFV VG Sbjct: 429 PGYWRAPELAAETFDEDGYYRSGDAVRFVDEARPEIGLMFDGRIAEDFKLSSGTFVSVGP 488 Query: 132 LRTDAIAAATPVVHDALVAGQDREFIGLLCWPNLHAC-RQLVGNADASYEDVIRHPEVVA 190 LR I+ P V DA++AG +R+ + +L +P L C A AS + P V A Sbjct: 489 LRARIISEGAPYVLDAVIAGMNRDDLSVLVFPRLEHCAALAGLGAGASPAQIADSPAVRA 548 Query: 191 CLKKGLQAHNASTTGSSMRIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALVEKLY 250 C L+ N + TGS+ RIAR L+ E PS+D E+TDKG INQRA L RRAAL+E +Y Sbjct: 549 CFAVLLERLNRAATGSANRIARLRLLEEAPSLDHGEVTDKGSINQRAVLARRAALIEAIY 608 Query: 251 AGEPGDDVIIL 261 AG GD ++L Sbjct: 609 AG--GDGKVML 617 >AGc2614 [IQ] COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 591 Score = 197 bits (502), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 108/249 (43%), Positives = 149/249 (59%), Gaps = 1/249 (0%) Query: 7 TVKTTGERIVFYTGWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLR 66 ++ T G ++ G GSTETAP S ++ G IG+P GV +K+VP +YELRL+ Sbjct: 332 SMATVGHAVLMGAGLGSTETAPFSLFCTEPQDKPGNIGIPAQGVTMKLVPFDGRYELRLK 391 Query: 67 GVNVTPGYFGQPDLTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTGTF 126 G N+TPGY+ +LTA FDEEGFY IGD F +DP +G F GR+ E+FKL TGT+ Sbjct: 392 GPNITPGYWRNGELTAAAFDEEGFYRIGDTVKFAVADDPRRGFYFDGRMAENFKLQTGTW 451 Query: 127 VHVGSLRTDAIAAATPVVHDALVAGQDREFIGLLCWPNLHACRQLV-GNADASYEDVIRH 185 V VG LR + ++ DA++ G++R +G L P + A R+LV G+ S ++IRH Sbjct: 452 VAVGPLRAQLVNMFAGLIRDAVITGENRAELGALVVPFIPALRELVRGSQHLSDAEIIRH 511 Query: 186 PEVVACLKKGLQAHNASTTGSSMRIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAAL 245 P V A + L AH +GS+ R+ R ++M + + E+TDKG INQRA L R L Sbjct: 512 PSVRAQIVAKLSAHQKQASGSASRVMRILVMEDALRFEKGEVTDKGSINQRAVLLHRKEL 571 Query: 246 VEKLYAGEP 254 VE LY P Sbjct: 572 VESLYGDTP 580 >YPO0537 [I] COG1022 Long-chain acyl-CoA synthetases (AMP-forming) Ype Yersinia pestis Length = 601 Score = 72.4 bits (176), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 107/235 (45%), Gaps = 13/235 (5%) Query: 20 GWGSTETAPTSTGTYWDTERVGLIGLPFPGVELKMVPCGSKYELRLRGVNVTPGYFGQPD 79 G+G TET T + R G IG P PG+++++ G++ E+++RG V GYF +P Sbjct: 376 GYGMTETCATVSCWEEQNFRFGSIGKPLPGIDVRL---GAENEIQVRGPIVMRGYFKKPQ 432 Query: 80 LTAKMFDEEGFYCIGDAGVFVNPEDPLQGIIFAGRVVEDFKLTTGTFVHVGSLRTDAIAA 139 T + F E+G+ GDAG QG +F ++D T+G ++ + Sbjct: 433 ETLEAFTEDGWLKTGDAGAL-----DAQGHLFITERLKDLMKTSGG-KYIAPQMIEGTLG 486 Query: 140 ATPVVHDALVAGQDREFIGLLCWPNLHACRQLVGNADASYED---VIRHPEVVACLKKGL 196 + + R+F+ L P+ + + + + Y D ++RH +V ++ L Sbjct: 487 QDRFIEQVAIIADTRKFVSALIVPSFESLEEYARSINLKYHDRLELLRHSHIVNMFEQRL 546 Query: 197 QAHNASTTGSSMRIARAMLMVEPPSIDGNELTDKGYINQRAGLERRAALVEKLYA 251 + ++ + L+ + +++ ELT + ++ L+R ++ +Y+ Sbjct: 547 KEIQKELALFE-QVKKFTLLPQAFTMETGELTPTMKLRRKIILQRYQNEIDLMYS 600