BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0257.0021.p         (177 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0980 [P] COG2059 Chromate transport protein ChrA Rso Ralstoni...   138   7e-33
all1110 [P] COG2059 Chromate transport protein ChrA Nos Nostoc s...    96   3e-20
FN0713 [P] COG2059 Chromate transport protein ChrA Fnu Fusobacte...    71   1e-12
RSp0555 [P] COG2059 Chromate transport protein ChrA Rso Ralstoni...    60   2e-09
BH0869 [P] COG2059 Chromate transport protein ChrA Bha Bacillus ...    60   2e-09

>RSc0980 [P] COG2059 Chromate transport protein ChrA Rso Ralstonia
           solanacearum
          Length = 181

 Score =  138 bits (347), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 109/165 (66%)

Query: 11  LVWTFGLMSLFAVGGANSAIPEMHRAAVDVHHWLTDKQFADVFAISQLSPGPNVLIVTLI 70
           L W F ++S  A+GGA+S +P+MHR  VD  H++T +Q + ++AISQ +PGPNVL V L 
Sbjct: 15  LFWHFTVLSFLAIGGASSTLPDMHRFLVDTRHYMTSEQLSAMYAISQAAPGPNVLFVELF 74

Query: 71  GYSVAGVAGALAATVAMCGPTALLAYYVSRFLDRSRDARWPAMIQAALVPLSIGLMAASG 130
           G+  AG+ GA+ A + +CGP+ ++A  V+  + ++ DARW  +I+  L PL+IGL+ ++G
Sbjct: 75  GWQAAGLGGAVVAMLGICGPSCVIAGIVAHVMHQAPDARWVMLIRRGLAPLTIGLLFSTG 134

Query: 131 LIVAQTSDQSWIAVLITIVAAALAFATRINPLWMLLAGGLLGFAG 175
            ++A+ +D S   V +T+        TR++PL ++ AG L+G  G
Sbjct: 135 WVLARATDHSVGTVALTVATVLACAFTRVHPLILVAAGALVGALG 179


>all1110 [P] COG2059 Chromate transport protein ChrA Nos Nostoc sp. PCC 7120
          Length = 402

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/142 (35%), Positives = 81/142 (57%)

Query: 33  MHRAAVDVHHWLTDKQFADVFAISQLSPGPNVLIVTLIGYSVAGVAGALAATVAMCGPTA 92
           + R  V+ + WLT +Q  D  AI Q +PGP     T IGY +AG AGA+A T+ +  P  
Sbjct: 257 LQRDLVERNQWLTSQQLLDAIAIGQFTPGPVFTTATFIGYLLAGNAGAIAGTIGIFLPAF 316

Query: 93  LLAYYVSRFLDRSRDARWPAMIQAALVPLSIGLMAASGLIVAQTSDQSWIAVLITIVAAA 152
           +L + V+ ++ + R + W +     +   S+GLMA     + QT+   W+ +++ IV+A 
Sbjct: 317 ILVWIVNPWVTKLRQSPWASGFLDGVNAASLGLMAGVTYTLGQTALVDWLTIILAIVSAI 376

Query: 153 LAFATRINPLWMLLAGGLLGFA 174
             F  +IN  W++LAGG +GFA
Sbjct: 377 AVFRFKINSAWLVLAGGAIGFA 398


>FN0713 [P] COG2059 Chromate transport protein ChrA Fnu Fusobacterium
           nucleatum
          Length = 176

 Score = 71.2 bits (173), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 85/166 (51%), Gaps = 6/166 (3%)

Query: 11  LVWTFGLMSLFAVGGANSAIPEMHRAAVDVHHWLTDKQFADVFAISQLSPGP-NVLIVTL 69
           L + F  + LF+ GG  + +P M    VDV+ W++ K F D+ AISQ++PGP ++ + T 
Sbjct: 6   LFFVFFKVGLFSFGGGYAILPLMQHEVVDVNKWISFKDFMDIVAISQITPGPISINLATH 65

Query: 70  IGYSVAGVAGALAATVAMCGPTALLAYYVSRFLDRSRDARWPAMIQAALVPLSIGLMAAS 129
           +GY + G  G+  AT ++  P+ ++   +  FL R         I  +L    +GL+ A+
Sbjct: 66  VGYRIGGTLGSTIATTSVVLPSIIIVSIIVIFLKRFNKLSVVQRIFKSLRVTIVGLILAA 125

Query: 130 G--LIVAQTS-DQSWIAVLITIVAAALAFATRINPLWMLLAGGLLG 172
           G  L V +   D     +  +++   L F  +I  + +++  GL G
Sbjct: 126 GIALFVKENFIDYKSYIIFTSVLIGGLIF--KIGSITLIILSGLAG 169


>RSp0555 [P] COG2059 Chromate transport protein ChrA Rso Ralstonia
           solanacearum
          Length = 401

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 40/74 (54%)

Query: 21  FAVGGANSAIPEMHRAAVDVHHWLTDKQFADVFAISQLSPGPNVLIVTLIGYSVAGVAGA 80
           F  G   + +P ++   V   HWL DKQF D  A++ ++PGP V+ V  IGY VAG+ GA
Sbjct: 240 FVFGSGLAIVPFLYGGVVTEFHWLNDKQFVDAVAVAMITPGPVVITVGFIGYLVAGLPGA 299

Query: 81  LAATVAMCGPTALL 94
             A V    P  L 
Sbjct: 300 CVAAVGTFLPCYLF 313


>BH0869 [P] COG2059 Chromate transport protein ChrA Bha Bacillus halodurans
          Length = 194

 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 2/108 (1%)

Query: 20  LFAVGGANSAIPEMHRAAVDVHHWLTDKQFADVFAISQLSPGP-NVLIVTLIGYSVAGVA 78
           +   GG  S IP +H+  V+ + W+TD +FADV A+    PGP N  +   IGY + G +
Sbjct: 18  MLGYGGGPSTIPLVHKEVVERYKWMTDDEFADVLALGNTLPGPINTKMAGYIGYRIGGWS 77

Query: 79  GALAATVAMCGPTALLAYYVSRFLDRSRDARWPAMIQAALVPLSIGLM 126
           G +   +A   PT +L   +   L + R++R    +  A+ P+ +G+M
Sbjct: 78  GLVNGVLATILPTVVLLIGLIGLLSQFRESRVVLGMTQAVTPV-VGVM 124