BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0257.0003.p         (125 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc3261 [GER] COG0697 Permeases of the drug/metabolite transport...    71   7e-13
AGc3419 [GER] COG0697 Permeases of the drug/metabolite transport...    69   2e-12
ECs2140 [GER] COG0697 Permeases of the drug/metabolite transport...    66   2e-11
CC3090 [GER] COG0697 Permeases of the drug/metabolite transporte...    65   3e-11
STM1517 [GER] COG0697 Permeases of the drug/metabolite transport...    58   6e-09

>RSc3261 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Rso Ralstonia solanacearum
          Length = 308

 Score = 70.9 bits (172), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 1   MKPADVGIAVMVAVIWGLAFVASRIALDEFSPELMTTLRFAIAALPC-LFLRKPGVSWPL 59
           M P D+ +A+ V ++WG+ FV  ++ L    P L+  LRFA+ A P  LF+ +P ++   
Sbjct: 11  MSPKDLLLALTVVLVWGVNFVIIKVGLHGVPPMLLGALRFALVAFPAILFVPRPKIALKW 70

Query: 60  LIAISATLFLGQFLAQAFAIVHGVPVGLSSVIVQSQALFTIAFAAVAFGEIPTR 113
           L+A  AT+  GQF     A+  G+P GL+S+++QSQA FT+  AAV   E P R
Sbjct: 71  LLAYGATISFGQFAFLFSAMYVGMPAGLASLVLQSQAFFTLTIAAVVLRE-PIR 123


>AGc3419 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 321

 Score = 69.3 bits (168), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/113 (37%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 8   IAVMVAVIWGLAFVASRIALDEFSPELMTTLRFAIAALP-CLFLRKPGVSWPLLIAISAT 66
           +A++   +WG  FVA ++ + +  P  +T +R+  AA+P   FL KP V W  +I     
Sbjct: 32  LALITVFLWGFNFVAIKVGVADMPPLFLTGVRYLFAAVPLVFFLPKPNVPWRHMIVYGMA 91

Query: 67  LFLGQFLAQAFAIVHGVPVGLSSVIVQSQALFTIAFAAVAFGEIPTRTXAAAA 119
           +   QF     AI  G+P GL+S+++QSQA FT+A A V  GE P  +  A A
Sbjct: 92  MGFFQFGLLYPAIKLGLPAGLASLVMQSQAFFTLALAVVFLGERPLPSQIAGA 144


>ECs2140 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Ecs Escherichia coli O157:H7
          Length = 299

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 37/95 (38%), Positives = 53/95 (55%), Gaps = 1/95 (1%)

Query: 16  WGLAFVASRIALDEFSPELMTTLRFAIAALPCLF-LRKPGVSWPLLIAISATLFLGQFLA 74
           WGL FV  ++ L    P ++  LRF + A P +F + +P V   LL+    T+   QF  
Sbjct: 16  WGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPKVPLNLLLGYGLTISFAQFAF 75

Query: 75  QAFAIVHGVPVGLSSVIVQSQALFTIAFAAVAFGE 109
              AI  G+P GL+S+++Q+QA FTI   A  FGE
Sbjct: 76  LFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGE 110


>CC3090 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Ccr Caulobacter vibrioides
          Length = 300

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 39/97 (40%), Positives = 54/97 (55%), Gaps = 1/97 (1%)

Query: 8   IAVMVAVIWGLAFVASRIALDEFSPELMTTLRFAIAALP-CLFLRKPGVSWPLLIAISAT 66
           +A+ V  +WG  FV  RI LD   P L  TLRF++  LP   F+++P VSW  L A    
Sbjct: 13  LALAVVAVWGTNFVVIRIGLDHLPPLLFATLRFSMVLLPMAFFVKRPAVSWANLAAYGVA 72

Query: 67  LFLGQFLAQAFAIVHGVPVGLSSVIVQSQALFTIAFA 103
           +  GQF     A+   +  GL+S++VQ+Q  FTI  A
Sbjct: 73  IGAGQFGLLFVAMKGHISPGLASLVVQTQVFFTIGMA 109


>STM1517 [GER] COG0697 Permeases of the drug/metabolite transporter (DMT)
           superfamily Sty Salmonella typhimurium LT2
          Length = 300

 Score = 57.8 bits (138), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 46/121 (38%), Positives = 66/121 (54%), Gaps = 1/121 (0%)

Query: 1   MKPADVGIAVMVAVIWGLAFVASRIALDEFSPELMTTLRFAIAALPCLF-LRKPGVSWPL 59
           M   D  +A++V V+WGL FV  ++ L    P L+  LRF + A P +F + +P V   L
Sbjct: 2   MSRKDGFLALLVVVVWGLNFVVIKVGLHHMPPLLLAGLRFLLVAFPAIFFVARPKVPLTL 61

Query: 60  LIAISATLFLGQFLAQAFAIVHGVPVGLSSVIVQSQALFTIAFAAVAFGEIPTRTXAAAA 119
           L+    T+  GQF     AI  G+P GL+S+++Q+QA FT+A  A  F E   R   A  
Sbjct: 62  LLGYGLTISFGQFAFLFCAIKFGMPAGLASLVLQAQAFFTMALGAFVFSERLQRKQLAGI 121

Query: 120 A 120
           A
Sbjct: 122 A 122