BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0255.0005.p (158 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3955 [EF] COG0458 Carbamoylphosphate synthase large subunit (... 266 1e-71 SMc01215 [EF] COG0458 Carbamoylphosphate synthase large subunit ... 265 4e-71 mlr2517 [EF] COG0458 Carbamoylphosphate synthase large subunit (... 264 7e-71 BMEI0522 [EF] COG0458 Carbamoylphosphate synthase large subunit ... 263 2e-70 CC2900 Non COG 261 4e-70 >AGc3955 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 1186 Score = 266 bits (681), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 127/138 (92%), Positives = 134/138 (97%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VLIEESVLGWKE+EMEVVRDK DNCIIICSIEN+DPMGVHTGDSITVAPALTLTDKEYQ+ Sbjct: 281 VLIEESVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQM 340 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MR+ASIAVLREIGVETGGSNVQF +NP DGR+VVIEMNPRVSRSSALASKATGFPIAKVA Sbjct: 341 MRNASIAVLREIGVETGGSNVQFAVNPKDGRLVVIEMNPRVSRSSALASKATGFPIAKVA 400 Query: 121 AKLAIGYTLDEIANDITG 138 AKLAIGYTLDE+ NDITG Sbjct: 401 AKLAIGYTLDELENDITG 418 Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 36/108 (33%), Positives = 62/108 (57%), Gaps = 3/108 (2%) Query: 23 DNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIMRDASIAVLREIGVETGGSNVQ 82 +N + +E+++ G+H+GDS P+ +L+ + + + A+ + + V G NVQ Sbjct: 880 ENVFVSGIMEHIEEAGIHSGDSACSLPSRSLSKETLDELERQTTALAKALKV-GGLMNVQ 938 Query: 83 FGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVAAKLAIGYTLD 130 + I DG + V+E+NPR SR+ +K G PIAK+AA++ G LD Sbjct: 939 YAIK--DGTIYVLEVNPRASRTVPFVAKTIGAPIAKIAARVMAGEKLD 984 >SMc01215 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Sme Sinorhizobium meliloti Length = 1163 Score = 265 bits (676), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 125/138 (90%), Positives = 135/138 (97%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VLIEESVLGWKE+EMEVVRDK DNCIIICSIEN+DPMGVHTGDSITVAPALTLTDKEYQI Sbjct: 257 VLIEESVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQI 316 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MR+ASIAVLREIGVETGGSNVQF +NP++GR+VVIEMNPRVSRSSALASKATGFPIAK+A Sbjct: 317 MRNASIAVLREIGVETGGSNVQFAVNPENGRLVVIEMNPRVSRSSALASKATGFPIAKIA 376 Query: 121 AKLAIGYTLDEIANDITG 138 AKLA+GYTLDE+ NDITG Sbjct: 377 AKLAVGYTLDELENDITG 394 Score = 64.7 bits (156), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/132 (34%), Positives = 73/132 (55%), Gaps = 6/132 (4%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTL-TDKEYQ 59 +L + + E +++ + D KD + +E+++ G+H+GDS P +L TD + Sbjct: 835 LLFDSYLTNAIEVDVDCLCDGKD-VFVSGIMEHIEEAGIHSGDSACSLPVHSLGTDMVDE 893 Query: 60 IMRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKV 119 + R A+ R + V G NVQF I DG + V+E+NPR SR+ +K G PIAK+ Sbjct: 894 LERQTG-ALARALNV-GGLMNVQFAIK--DGTIYVLEVNPRASRTVPFVAKTIGAPIAKI 949 Query: 120 AAKLAIGYTLDE 131 AA++ G LDE Sbjct: 950 AARVMAGEMLDE 961 >mlr2517 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Mlo Mesorhizobium loti Length = 1167 Score = 264 bits (674), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 124/138 (89%), Positives = 134/138 (97%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VLIEESVLGWKE+EMEVVRDK DNCII+CSIEN+DPMGVHTGDSITVAPALTLTDKEYQ+ Sbjct: 256 VLIEESVLGWKEYEMEVVRDKADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQM 315 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MR+ASIAVLREIGVETGGSNVQF +NP DGR+VVIEMNPRVSRSSALASKATGFPIAK+A Sbjct: 316 MRNASIAVLREIGVETGGSNVQFAVNPADGRLVVIEMNPRVSRSSALASKATGFPIAKIA 375 Query: 121 AKLAIGYTLDEIANDITG 138 AKLA+GYTLDE+ NDITG Sbjct: 376 AKLAVGYTLDELENDITG 393 Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 4/131 (3%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 +L + + G E +++ + D K + +E+++ G+H+GDS P +L + Sbjct: 840 LLFDTYLSGAIEVDVDCLCDGK-ATFVSGILEHIEEAGIHSGDSACSLPVHSLPSELVDE 898 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 + + A+ R + V G NVQ+ I DG + V+E+NPR SR+ +K G PIAK+A Sbjct: 899 LERQTAALARALNV-GGLMNVQYAIK--DGTVYVLEVNPRASRTVPFVAKTIGRPIAKIA 955 Query: 121 AKLAIGYTLDE 131 A++ G TL++ Sbjct: 956 ARIMAGETLED 966 >BMEI0522 [EF] COG0458 Carbamoylphosphate synthase large subunit (split gene in MJ) Bme Brucella melitensis Length = 1162 Score = 263 bits (671), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/138 (91%), Positives = 133/138 (96%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VLIEESVLGWKE+EMEVVRD DNCIIICSIEN+DPMGVHTGDSITVAPALTLTDKEYQI Sbjct: 257 VLIEESVLGWKEYEMEVVRDHADNCIIICSIENLDPMGVHTGDSITVAPALTLTDKEYQI 316 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MR+ASIAVLREIGVETGGSNVQF INP +GRM+VIEMNPRVSRSSALASKATGFPIAKVA Sbjct: 317 MRNASIAVLREIGVETGGSNVQFAINPANGRMIVIEMNPRVSRSSALASKATGFPIAKVA 376 Query: 121 AKLAIGYTLDEIANDITG 138 AKLA+GYTLDE+ NDITG Sbjct: 377 AKLAVGYTLDELDNDITG 394 Score = 67.8 bits (164), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 49/147 (33%), Positives = 82/147 (55%), Gaps = 15/147 (10%) Query: 12 EFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQIM--RDASIAVL 69 E +++ + D KD+ ++ +E+++ G+H+GDS + P TL+ + + + A++A Sbjct: 845 EVDVDCLCDGKDS-LVAGIMEHIEEAGIHSGDSACLLPVHTLSPEIVAELERQTAALATA 903 Query: 70 REIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVAAKLAIGYTL 129 +G G NVQF I DG + ++E+NPR SR+ +K G PIAKVAA++ G +L Sbjct: 904 LHVG---GLMNVQFAIK--DGEIFILEVNPRASRTVPFVAKTVGTPIAKVAARIMAGESL 958 Query: 130 DEIANDITGDRGENAPKQESCAQHHVA 156 E A D G K + A+ H+A Sbjct: 959 -EAAFDAYGG------KPQPTARPHIA 978 >CC2900 Non COG Length = 1099 Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 124/138 (89%), Positives = 132/138 (95%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 VL+EESVLGWKE+EMEVVRDK DNCII+CSIEN+DPMGVHTGDSITVAPALTLTDKEYQ Sbjct: 204 VLVEESVLGWKEYEMEVVRDKADNCIIVCSIENIDPMGVHTGDSITVAPALTLTDKEYQW 263 Query: 61 MRDASIAVLREIGVETGGSNVQFGINPDDGRMVVIEMNPRVSRSSALASKATGFPIAKVA 120 MR ASIAVLREIGVETGGSNVQF +NP DGRMVVIEMNPRVSRSSALASKATGFPIAKVA Sbjct: 264 MRAASIAVLREIGVETGGSNVQFAVNPADGRMVVIEMNPRVSRSSALASKATGFPIAKVA 323 Query: 121 AKLAIGYTLDEIANDITG 138 A+LA+GYTLDE+ NDITG Sbjct: 324 ARLAVGYTLDELKNDITG 341 Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 39/132 (29%), Positives = 73/132 (55%), Gaps = 5/132 (3%) Query: 1 VLIEESVLGWKEFEMEVVRDKKDNCIIICSIENVDPMGVHTGDSITVAPALTLTDKEYQI 60 +L++ + E +++ + D KD + +E+++ GVH+GDS P +L + + Sbjct: 762 ILLDHYLSRATEVDVDALCDGKD-VFVAGVLEHIEEAGVHSGDSACSMPPFSLKAETVEE 820 Query: 61 MRDASIAVLREIGVETGGSNVQFGI---NPDDGRMVVIEMNPRVSRSSALASKATGFPIA 117 ++ ++ + + V G NVQF I + D+ R+ V+E+NPR SR+ +K G P+A Sbjct: 821 LKRQTVQMALALNVR-GLMNVQFAIEEPHSDNPRIYVLEVNPRASRTVPFVAKTIGQPVA 879 Query: 118 KVAAKLAIGYTL 129 +AAK+ G +L Sbjct: 880 AIAAKIMAGESL 891