BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0254.0011.p (284 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl3463 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 144 2e-34 SMc04882 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 140 3e-33 PA4109 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 137 3e-32 mlr2880 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 133 4e-31 perR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 131 2e-30 >AGl3463 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 292 Score = 144 bits (363), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 102/280 (36%), Positives = 138/280 (49%), Gaps = 7/280 (2%) Query: 1 LQAFDVAVRLGSFKEAAGVLNVSASAISHRIRNLEIHLGVALFHRTHRVVRPSPAGEKLA 60 L+AF+ + R SF AA L V+ +A+S +++ LE LGVALF R R ++ + GE L Sbjct: 11 LRAFEASARHLSFTRAAIELCVTQAAVSQQVKGLEKRLGVALFQRLPRGLKITAEGEALL 70 Query: 61 AATGRAFALLAQAESAVEAAGQRR--LRLKVLPQFASAWLIPRLSSFLTRHSELDLAIET 118 +F +A +EA GQ R L L V+ FA WL+PRL++F RH +D+ + T Sbjct: 71 PTVTSSFDQMATTLDRIEA-GQVRELLFLGVVGTFAVGWLLPRLAAFQKRHPFIDVRVST 129 Query: 119 SNRNVDFDAETFDAGISFGPDKPEGVVAHRLMEVRTVPVGAPALTRRLKLRTAADLGRGV 178 +N VD AE D I FG G A RL E P+ P L LK ADL Sbjct: 130 NNNRVDMAAEGLDFAIRFGQGSWHGTDAFRLFEAPLSPLCTPKLAEMLK--EPADLMDAT 187 Query: 179 LIHVTTFPAAWPLWFKHAG-EPAPPATRAISVDSFVAALQAAERGAGVALALEPFIGESE 237 L+ + W WF AG PA I D+ + ++AA +G GVALA Sbjct: 188 LLR-SYRADEWSTWFAAAGVSPAAQVNAGIVFDTSLGMMEAALQGLGVALAPPSMFSRHL 246 Query: 238 RRGAIRRLLPVGHVTGSYWLVHPPGAQRSRALQTFKKWLL 277 GA+ + PV GSYWL ++ A+Q F WLL Sbjct: 247 TSGAVMQPFPVTISLGSYWLTRLQSKPQTSAMQAFSDWLL 286 >SMc04882 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 297 Score = 140 bits (354), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 96/287 (33%), Positives = 137/287 (47%), Gaps = 11/287 (3%) Query: 1 LQAFDVAVRLGSFKEAAGVLNVSASAISHRIRNLEIHLGVALFHRTHRVVRPSPAGEKLA 60 LQAF+ A R GSF +AA LN++ SA+S +I++LE LGV LF R + V S AG+K Sbjct: 14 LQAFECAARHGSFTQAAAELNLTQSAVSRQIKDLENQLGVLLFERVRQRVILSDAGQKFL 73 Query: 61 AATGRAFALLAQAESAV-----EAAGQRRLRLKVLPQFASAWLIPRLSSFLTRHSELDLA 115 R LL Q E + A L + LP F S WL+PRL FL RH + Sbjct: 74 PEVRR---LLNQTEELMVRAMASARADSSLSIASLPTFGSRWLVPRLPDFLRRHPGTVVN 130 Query: 116 IETSNRNVDFDAETFDAGISFGPDKPEGVVAHRLMEVRTVPVGAPALTRRLKLRTAADLG 175 I + + DF+ + FD I +G + + L VP +PAL + AD+G Sbjct: 131 IASRSEPFDFEEQNFDLAIHYGQPVWARAICNYLCSEVIVPAASPALLSVHPVEAPADIG 190 Query: 176 RGVLIHVTTFPAAWPLWFKHAGEPAPPATRAISVDSFVAALQAAERGAGVALALEPFIGE 235 L+H+ T P W WF+ G A R D F ++AA G G AL I + Sbjct: 191 GAPLLHLATRPKLWAQWFEANGVEQDGAYRGNRFDQFSMVIEAATAGLGFALLPRYLIEQ 250 Query: 236 SERRGAIRRLL--PVGHVTGSYWLVHPPGAQRSRALQTFKKWLLAEL 280 G +R +L P+ SY+L P G + + F++W+ ++ Sbjct: 251 ELTAGTLRIVLDRPM-QTENSYYLAIPEGKLENPISRAFREWITEQV 296 >PA4109 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 296 Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 100/279 (35%), Positives = 136/279 (48%), Gaps = 5/279 (1%) Query: 1 LQAFDVAVRLGSFKEAAGVLNVSASAISHRIRNLEIHLGVALFHRTHRVVRPSPAGEKLA 60 L+AF+ + R SF AA L V+ +A+SH++++LE LGVALF R R + + GE L Sbjct: 11 LRAFEASARHLSFTRAAIELCVTQAAVSHQVKSLEERLGVALFKRLPRGLMLTHEGESLL 70 Query: 61 AATGRAFALLAQAESAVEAAGQRR-LRLKVLPQFASAWLIPRLSSFLTRHSELDLAIETS 119 +F +A E R L + + F WL+PRL F RH +DL + T Sbjct: 71 PVLCDSFDRIAGLLERFEGGHYRDVLTVGAVGTFTVGWLLPRLEDFQARHPFIDLRLSTH 130 Query: 120 NRNVDFDAETFDAGISFGPDKPEGVVAHRLMEVRTVPVGAPALTRRLKLRTAADLGRGVL 179 N VD AE D I FG G A L E + P + +L + ADL + L Sbjct: 131 NNRVDIAAEGLDYAIRFGGGAWHGTEALALFEAPLTVLCCPEVAA--QLHSPADLLQHTL 188 Query: 180 IHVTTFPAAWPLWFKHAGEPA-PPATRAISVDSFVAALQAAERGAGVALALEPFIGESER 238 + + WPLWF+ AG PA P TR+I D+ +A L+AA +G GVALA Sbjct: 189 LR-SYRADEWPLWFQAAGLPAHAPLTRSIVFDTSLAMLEAARQGVGVALAPAAMFARQLA 247 Query: 239 RGAIRRLLPVGHVTGSYWLVHPPGAQRSRALQTFKKWLL 277 +IRR TGSYWL + A+ F+ WLL Sbjct: 248 SESIRRPFATEVSTGSYWLTRLQSRGETSAMLAFRGWLL 286 >mlr2880 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 303 Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 139/290 (47%), Gaps = 15/290 (5%) Query: 1 LQAFDVAVRLGSFKEAAGVLNVSASAISHRIRNLEIHLGVALFHRTHRVVRPSPAGEKLA 60 L AF+ RLGSF AA L+++ A+S +IR LE G LF R R VR S AGE A Sbjct: 14 LAAFEAVARLGSFTAAAQELDLTQGAVSRQIRLLEDQFGRRLFERDSRNVRLSTAGEIYA 73 Query: 61 AATGRAFALLAQAESAVEAAGQRR---LRLKVLPQFASAWLIPRLSSFLTRHSELDLAIE 117 A A L A A+ R L L +LP F + WL+P + F+ + ++ + Sbjct: 74 EAVRSALGQLRDA--ALGLMSNRHSGILNLAILPTFGTRWLMPMIPDFVANNPDITINFV 131 Query: 118 TSNRNVDFDAETFDAGISFG-PDKPEGVVAHRLMEVRTVPVGAPALTRRLKLRTAADLGR 176 T DF E DA I +G PD PE + LM PV +P + T AD+GR Sbjct: 132 TRVGRFDFARERLDAAIHYGLPDWPEA-DSTLLMSETVAPVVSPEFLASRAIATPADIGR 190 Query: 177 GVLIHVTTFPAAWPLWFKHAGEPAPPATRAISVDSFVAALQAAERGAGVALALEPFIGES 236 L+H+ T P AW WF+H G A PA + + F A QA G GVAL I Sbjct: 191 QPLLHMATRPGAWTEWFEHQGLSA-PAGPGMQFEQFGTAAQACMAGLGVALLPLLLIAGE 249 Query: 237 ERRGAIRRLLPV----GHVTGSYWLVHPPGAQRSRALQTFKKWLLAELAK 282 +RG +L+P +Y+LV P + + +F+ WLL ++ K Sbjct: 250 LQRG---QLVPAPGQPMQSRSAYYLVVPHDKREHPPVASFRDWLLEQVEK 296 >perR [K] COG0583 Transcriptional regulator Eco Escherichia coli K12 Length = 297 Score = 131 bits (330), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 131/286 (45%), Gaps = 12/286 (4%) Query: 1 LQAFDVAVRLGSFKEAAGVLNVSASAISHRIRNLEIHLGVALFHRTHRVVRPSPAGEKLA 60 L+AF+ A R G+F AA L +S SAISH IR LE L V LF R+ R + + GE L Sbjct: 12 LRAFEAAGRTGAFALAASELELSPSAISHAIRKLENLLDVRLFQRSTREITLTKEGEILL 71 Query: 61 AATGRAFALLAQAESAVEAAGQRRLRLKVLPQFASAWLIPRLSSFLTRHSELDLAIETSN 120 R F L Q + V A R LRL P FA WL+PRL F+ + +DL + S Sbjct: 72 EHIQRGFNELQQGLALVTADESRPLRLHTAPSFAHQWLLPRLGKFIRENPSIDLRLSAST 131 Query: 121 RNVDFDAETFDAGISFGPDKPEGVVAHRLMEVRTVPVGAPALTRRLKLRTAADLGRGVLI 180 F+ + FD I +G +P L P+ +P L RLK DL LI Sbjct: 132 EYARFEQDDFDLDIVYGEPRPSPYEKIPLAVEELTPLCSPQLAERLK--KPEDLYALTLI 189 Query: 181 HVTTFPAAWPLWFKHAGEPAPPATRAISVDSFVAALQAAERGAGVALALEPFIGESERRG 240 W WF+ A + PP + D A+ AA G GV L + +ER Sbjct: 190 QCDVQLYQWKGWFE-ANKMTPPNNYGLRFDRSFMAIAAAVDGLGVVLESKLL---AEREI 245 Query: 241 AIRRLL-PVGHVTGS-----YWLVHPPGAQRSRALQTFKKWLLAEL 280 A +L+ P+ + T ++LV P AL FK WLL EL Sbjct: 246 ASGKLVCPLVNSTSEIHYIGHYLVFPQHQHMHSALDVFKTWLLNEL 291