BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0252.0005.p         (212 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sll1169 [T] COG0664 cAMP-binding proteins - catabolite gene acti...   109   4e-24
SMa1948 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    71   2e-12
mlr2110 [T] COG0664 cAMP-binding proteins - catabolite gene acti...    69   8e-12

>sll1169 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Syn
           Synechocystis
          Length = 238

 Score =  109 bits (273), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 67/208 (32%), Positives = 109/208 (52%), Gaps = 7/208 (3%)

Query: 5   SRPP---NGFLASLSASDFELIRPHLRTVDLAADSVLVETDEVLKRTYMPHKGVISLVVK 61
           + PP   N  L  L    ++ + PHL+ V     +VL E +EV++  Y P+  +IS+V  
Sbjct: 3   NNPPIKLNQLLGLLPVEAYKRLAPHLKKVVYKTGTVLYEPNEVMEFAYFPNTAMISVVSI 62

Query: 62  LARGERVQVAMVGRDSIYDAFAPLVEGPVLNNAAVLVP--GIASTVELEPLRAAAGQSPT 119
           +  G   ++ ++G + +     P++ G     + V+V   G A  +    L     QSP 
Sbjct: 63  MEDGSTTEIGLIGNEGMVGL--PIILGGKQTTSQVIVQVQGEAWKLSAHILLREFEQSPQ 120

Query: 120 LRARLIRHGLAVYAQIQQTAGCNAAHTVESRLARCLLHTRDLSGSNKIVLTQEAMAQMIG 179
           L+  L+ +  A   Q+ Q+A CN  H +E RLAR L+   D    ++I LTQE +A M+G
Sbjct: 121 LQRILLLYTQARLTQVSQSAACNRQHKIEERLARWLMSVHDCLQVDEIPLTQEFVANMLG 180

Query: 180 ARRNSVSLVAHTLQQANFIHYSRGHIEI 207
            RR+ V++ A++LQQ+  I Y RG I +
Sbjct: 181 VRRSGVTIAANSLQQSGMITYRRGKITL 208


>SMa1948 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Sme
           Sinorhizobium meliloti
          Length = 238

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 86/199 (43%)

Query: 9   NGFLASLSASDFELIRPHLRTVDLAADSVLVETDEVLKRTYMPHKGVISLVVKLARGERV 68
           N  L  L   D+  I P L  V +   +++      +   Y    G+ SLV     G + 
Sbjct: 11  NQLLDLLPEPDYNQIAPDLDYVKVTRGALIATAGAPIDHVYYLTSGIGSLVASTPEGNKA 70

Query: 69  QVAMVGRDSIYDAFAPLVEGPVLNNAAVLVPGIASTVELEPLRAAAGQSPTLRARLIRHG 128
           +  + G +      A +     +++  + + G A  +E    R    ++      +IR  
Sbjct: 71  EAGIFGSEGYIPTSAAMGVELSVHDIIMQIEGNAYRMEFSAFRKWMDRNRNFARVMIRCI 130

Query: 129 LAVYAQIQQTAGCNAAHTVESRLARCLLHTRDLSGSNKIVLTQEAMAQMIGARRNSVSLV 188
            A   Q+  TA  NA H V+ RLAR LL   D    ++I LT E ++ M+  RR SV+  
Sbjct: 131 EAFSIQLTYTAISNALHGVDERLARWLLMCHDRVSGDEIPLTHEFISLMLAVRRPSVTTS 190

Query: 189 AHTLQQANFIHYSRGHIEI 207
            H L+   FI  +RG+I I
Sbjct: 191 LHVLEGNGFIRSNRGNIII 209


>mlr2110 [T] COG0664 cAMP-binding proteins - catabolite gene activator and
           regulatory subunit of cAMP-dependent protein kinases Mlo
           Mesorhizobium loti
          Length = 243

 Score = 68.9 bits (167), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 55/199 (27%), Positives = 90/199 (45%)

Query: 9   NGFLASLSASDFELIRPHLRTVDLAADSVLVETDEVLKRTYMPHKGVISLVVKLARGERV 68
           N  L  + A D  L+ PH++   L    +LV  +  ++  Y   +G+ S+V   A G   
Sbjct: 14  NELLRFMPADDLALLAPHMQRCALPVRMMLVTPNIPIEAVYFIEQGIGSVVASTASGHDA 73

Query: 69  QVAMVGRDSIYDAFAPLVEGPVLNNAAVLVPGIASTVELEPLRAAAGQSPTLRARLIRHG 128
           ++  +G + +  +   + +    +   V + G A  ++  P  AA   SPTLR  L+   
Sbjct: 74  EIGFIGFEGMTGSALVMGDDRAAHACFVQLEGEAIRIDAAPFNAALAASPTLRLFLLHFV 133

Query: 129 LAVYAQIQQTAGCNAAHTVESRLARCLLHTRDLSGSNKIVLTQEAMAQMIGARRNSVSLV 188
             ++ Q   TA  NA   +E RLAR LL   D      + +T E ++ M+G RR  V++ 
Sbjct: 134 NTLHTQTGCTALVNARLKLEERLARWLLMCDDRVPGESLAMTHEFLSIMLGVRRPGVTVA 193

Query: 189 AHTLQQANFIHYSRGHIEI 207
              L+    I   RG I I
Sbjct: 194 LQLLEGRALIRSRRGEIVI 212