BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0251.0024.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv3542c [R] COG1545 Predicted nucleic-acid-binding protein conta...    60   1e-09
MT3646 [R] COG1545 Predicted nucleic-acid-binding protein contai...    60   1e-09

>Rv3542c [R] COG1545 Predicted nucleic-acid-binding protein containing a
           Zn-ribbon Mtu Mycobacterium tuberculosis H37Rv
          Length = 311

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 2   INDNIKPQRPLPKIGSYLDTKEFWGGAKRGKLMLQFCTQTQRYQHYPRPISLYTGRHTIE 61
           + D++ P   + +  S  DT  FW G K  +L +Q        +H P P         I 
Sbjct: 176 VPDDLDPDAMM-RPSSSRDTAFFWDGVKAHELRIQRLADGS-LRHPPVPAVWQDKSVPIN 233

Query: 62  WRETSGKGTVYSWTVTRSP-WPGHEARVPYLCAYVDLAEGVRFLCNLVDCSEDEVVIGMP 120
           +  +SG+GTV+S+ V  +P  PG    VP++ A V+L EGVR L  L       V IGMP
Sbjct: 234 YVVSSGRGTVFSFVVHHAPKVPGRT--VPFVIALVELEEGVRMLGELRGADPARVAIGMP 291

Query: 121 VEVRWDRLNDETVY 134
           V   +    D ++Y
Sbjct: 292 VRATYIDFPDWSLY 305


>MT3646 [R] COG1545 Predicted nucleic-acid-binding protein containing a
           Zn-ribbon MtC Mycobacterium tuberculosis CDC1551
          Length = 311

 Score = 60.5 bits (145), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 44/134 (32%), Positives = 64/134 (47%), Gaps = 5/134 (3%)

Query: 2   INDNIKPQRPLPKIGSYLDTKEFWGGAKRGKLMLQFCTQTQRYQHYPRPISLYTGRHTIE 61
           + D++ P   + +  S  DT  FW G K  +L +Q        +H P P         I 
Sbjct: 176 VPDDLDPDAMM-RPSSSRDTAFFWDGVKAHELRIQRLADGS-LRHPPVPAVWQDKSVPIN 233

Query: 62  WRETSGKGTVYSWTVTRSP-WPGHEARVPYLCAYVDLAEGVRFLCNLVDCSEDEVVIGMP 120
           +  +SG+GTV+S+ V  +P  PG    VP++ A V+L EGVR L  L       V IGMP
Sbjct: 234 YVVSSGRGTVFSFVVHHAPKVPGRT--VPFVIALVELEEGVRMLGELRGADPARVAIGMP 291

Query: 121 VEVRWDRLNDETVY 134
           V   +    D ++Y
Sbjct: 292 VRATYIDFPDWSLY 305