BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0028.p         (132 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI0159 [C] COG2009 Succinate dehydrogenase/fumarate reductase,...   137   7e-33
AGc4794 [C] COG2009 Succinate dehydrogenase/fumarate reductase, ...   137   8e-33
mll4266 [C] COG2009 Succinate dehydrogenase/fumarate reductase, ...   135   3e-32
SMc02463 [C] COG2009 Succinate dehydrogenase/fumarate reductase,...   134   7e-32
RP126 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cy...    95   4e-20

>BMEI0159 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome
           b subunit Bme Brucella melitensis
          Length = 132

 Score =  137 bits (344), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 86/123 (69%)

Query: 6   ERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQAFTGS 65
           +RPLSPHL  Y+  +TM +SIVHR TG ALYFGTLLLA WL +AA+    +  + A   S
Sbjct: 9   QRPLSPHLSIYKPVITMTMSIVHRITGGALYFGTLLLAAWLISAATSEECFNTINALFSS 68

Query: 66  AIGKLIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVLIWIIA 125
            IG+LI+FGYTWAL+HHL  G+RHF+WD G   + +    + W ++V  +  T+L+W++A
Sbjct: 69  WIGRLILFGYTWALLHHLAGGVRHFIWDTGAAMEKHTASKIAWASVVFSVVATILVWVVA 128

Query: 126 YAV 128
           Y+V
Sbjct: 129 YSV 131


>AGc4794 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome
           b subunit Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 165

 Score =  137 bits (344), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 85/123 (69%)

Query: 6   ERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQAFTGS 65
            RPLSPHLQ Y+   TM  SIVHR TG ALYFGTLL+AWWL A ASGP+ Y  V    G+
Sbjct: 42  NRPLSPHLQIYKPIPTMVASIVHRITGGALYFGTLLVAWWLIALASGPAYYDWVNWAMGT 101

Query: 66  AIGKLIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVLIWIIA 125
            IG+LI+ GYTWAL+HH+  G+RHF+WDLG+GF  +    L   + VA I LT LIW+I 
Sbjct: 102 IIGRLILIGYTWALVHHMLGGLRHFMWDLGHGFDKHFTTKLAKASWVASICLTALIWVIV 161

Query: 126 YAV 128
             V
Sbjct: 162 LIV 164


>mll4266 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome
           b subunit Mlo Mesorhizobium loti
          Length = 139

 Score =  135 bits (339), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/128 (53%), Positives = 86/128 (67%)

Query: 3   ARIERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQAF 62
           AR ERPLSPHL  YR  +TM +SI+HR TG ALYFGTLL+A WL AAAS  + +  V   
Sbjct: 11  ARRERPLSPHLTIYRPPITMTMSIIHRITGGALYFGTLLVAIWLMAAASSQATFDWVNWA 70

Query: 63  TGSAIGKLIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVLIW 122
            G+ +G+LI+FGYTWALMHH+  G+RH VWD G G + +    + W  LV  + LT+LIW
Sbjct: 71  FGTWLGRLILFGYTWALMHHMLGGVRHLVWDTGAGLEKHTASKIAWATLVGSVLLTLLIW 130

Query: 123 IIAYAVGG 130
           I  Y   G
Sbjct: 131 IAGYMARG 138


>SMc02463 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome
           b subunit Sme Sinorhizobium meliloti
          Length = 130

 Score =  134 bits (336), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 66/121 (54%), Positives = 86/121 (71%)

Query: 6   ERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQAFTGS 65
            RPLSPHLQ Y+   TM +SI+HR TG ALYFGT+L+AWWL AAASG + Y  V    G+
Sbjct: 7   SRPLSPHLQIYKPIPTMIMSIMHRITGGALYFGTVLVAWWLIAAASGTAYYDWVNWLFGT 66

Query: 66  AIGKLIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVLIWIIA 125
            IGK+++FGYTWAL+HHL  GIRH  WDLGYG++ +    +    +VA   LT++IW++ 
Sbjct: 67  FIGKVVLFGYTWALVHHLLGGIRHLAWDLGYGYEKHFATRMAKAMIVASATLTLVIWVVG 126

Query: 126 Y 126
           Y
Sbjct: 127 Y 127


>RP126 [C] COG2009 Succinate dehydrogenase/fumarate reductase, cytochrome
           b subunit Rpr Rickettsia prowazekii
          Length = 124

 Score = 94.7 bits (234), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 66/120 (55%), Gaps = 8/120 (6%)

Query: 6   ERPLSPHLQTYRWTLTMALSIVHRATGLALYFGTLLLAWWLTAAASGPSAYANVQAFTGS 65
           +RP SPHL  Y+  ++  LSI+HR TG+AL+F   +L WWL  +        N       
Sbjct: 11  KRPTSPHLTIYKPQISSTLSILHRMTGVALFFVVSILVWWLILSKYD----NNYLQLASC 66

Query: 66  AIGK--LIVFGYTWALMHHLCSGIRHFVWDLGYGFKANEREALTWGALVAGIALTVLIWI 123
            I K  L+ F Y+W   +HLC+GIRH  WD+GYGF         W  +V  I LT+L+W+
Sbjct: 67  CIIKICLVAFSYSWC--YHLCNGIRHLFWDIGYGFSIKAVNITGWCVVVCSILLTMLLWV 124