BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0008.p         (178 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2248 [E] COG0559 Branched-chain amino acid ABC-type transport...   134   1e-31
BMEII0632 [E] COG0559 Branched-chain amino acid ABC-type transpo...   116   2e-26
AGl704 [E] COG0559 Branched-chain amino acid ABC-type transport ...   104   1e-22
SMb20787 [E] COG0559 Branched-chain amino acid ABC-type transpor...   104   1e-22
AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport...    96   3e-20

>RSc2248 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Rso Ralstonia solanacearum
          Length = 289

 Score =  134 bits (337), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 91/162 (56%), Positives = 122/162 (75%), Gaps = 2/162 (1%)

Query: 17  EGQIDLFGVG--IGRYRLMIVVICGLLTLALQLILVKTRFGSRLRAAVDDPRAAIGLGIN 74
            GQ+ +F  G  +GRYRL +V +  +LT  L  ++ +TRFG+R+RA+VD+ +AA GLGIN
Sbjct: 128 RGQLRVFDTGLEVGRYRLFLVGVVVVLTALLAWLIERTRFGARVRASVDNQQAAAGLGIN 187

Query: 75  VPQVFAFTFAFGCGLAGLGGALSAEILGLDPYFPLKFMIYFLIVVTVGGSSSITGPFLAS 134
           V  VF+ TFA G GLAGLGG L  ++LGLDP FP+K+M+YFL+VV VGG+ SI G  LA+
Sbjct: 188 VGLVFSVTFALGSGLAGLGGGLGIDVLGLDPAFPIKYMVYFLLVVAVGGAGSIKGTLLAA 247

Query: 135 LLLGIADVAGKYYVPKLGPFVIYTVMIVILLWRPNGLFGRTA 176
           L+LG+ DVAGKYYVP++G FVIY +M+++L   P GL GR A
Sbjct: 248 LVLGVFDVAGKYYVPEVGAFVIYGLMVLLLALFPGGLLGRRA 289


>BMEII0632 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Bme Brucella melitensis
          Length = 289

 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 67/163 (41%), Positives = 98/163 (60%), Gaps = 2/163 (1%)

Query: 17  EGQIDLFGVGIGRYRLMIVVICGL-LTLALQLILVKTRFGSRLRAAVDDPRAAIGLGINV 75
            G +DL    I ++R+   + CGL + + L   + +T FG +LRAAVD+   A  LG+  
Sbjct: 128 RGSVDLGFRAIAKHRIF-AIGCGLAVAVGLWYAVERTAFGVKLRAAVDNANMAAALGVRT 186

Query: 76  PQVFAFTFAFGCGLAGLGGALSAEILGLDPYFPLKFMIYFLIVVTVGGSSSITGPFLASL 135
             V+A +FA   GLA  GG + AE+L ++PY+ L++M+ FL+VV+VG + SI G  +A L
Sbjct: 187 EIVYAVSFALAIGLAAFGGVVGAELLPVEPYYALRYMVTFLVVVSVGRAGSIPGALVACL 246

Query: 136 LLGIADVAGKYYVPKLGPFVIYTVMIVILLWRPNGLFGRTAAR 178
           LLG  D  G+Y  P+ G F  Y  +IVI+   P GL GR A +
Sbjct: 247 LLGAIDTTGRYLAPEYGEFFFYLAVIVIVTLFPRGLAGRLARK 289


>AGl704 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 311

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/158 (43%), Positives = 94/158 (59%), Gaps = 2/158 (1%)

Query: 18  GQIDLFGVGIGRYRLMIVVICGLLTL-ALQLILVKTRFGSRLRAAVDDPRAAIGLGINVP 76
           G  DL    I  +R+  +  CGL    AL     KT FG +LRAAVD+   A  LG+   
Sbjct: 153 GPTDLGFRTIATHRIFAIA-CGLAVAGALWFTFEKTAFGIKLRAAVDNAAMAAALGVRTE 211

Query: 77  QVFAFTFAFGCGLAGLGGALSAEILGLDPYFPLKFMIYFLIVVTVGGSSSITGPFLASLL 136
            ++A +FA   GLA +GG + AE+L ++PY+ L++M+ FL+VV+VGG+ SI G  +A LL
Sbjct: 212 IIYAVSFAIAVGLAAMGGVIGAELLPVEPYYALRYMVTFLVVVSVGGAGSIPGALIACLL 271

Query: 137 LGIADVAGKYYVPKLGPFVIYTVMIVILLWRPNGLFGR 174
           LG  D  G+Y  P+ G F  Y  +IVI+   P GL GR
Sbjct: 272 LGAIDTTGRYLAPEYGEFFFYLAVIVIITLFPRGLLGR 309


>SMb20787 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Sme Sinorhizobium meliloti
          Length = 287

 Score =  104 bits (259), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 95/159 (59%), Gaps = 2/159 (1%)

Query: 17  EGQIDLFGVGIGRYRLMIVVICGLLTL-ALQLILVKTRFGSRLRAAVDDPRAAIGLGINV 75
           EG  DL    I  +R+  +V CGL    AL   + KT FG +LRAAVD+   A  LG+  
Sbjct: 128 EGSADLGFRSIAVHRIFAIV-CGLAVAGALWFAIEKTAFGVKLRAAVDNAAMAAALGVRT 186

Query: 76  PQVFAFTFAFGCGLAGLGGALSAEILGLDPYFPLKFMIYFLIVVTVGGSSSITGPFLASL 135
             V+A +FA   GLA  GG + AE+L ++PY+ L++M+ FL+VV+VGG+ SI G   A L
Sbjct: 187 EVVYAVSFAVAVGLAAFGGVVGAELLPVEPYYALRYMVTFLVVVSVGGAGSIPGALAACL 246

Query: 136 LLGIADVAGKYYVPKLGPFVIYTVMIVILLWRPNGLFGR 174
           LLG  D  G+Y +P+ G F  Y  +I I+   P GL GR
Sbjct: 247 LLGGIDTTGRYLMPEFGEFFFYLAVIAIVCVFPRGLAGR 285


>AGl1455 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 295

 Score = 96.3 bits (238), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 60/148 (40%), Positives = 81/148 (54%)

Query: 29  RYRLMIVVICGLLTLALQLILVKTRFGSRLRAAVDDPRAAIGLGINVPQVFAFTFAFGCG 88
            YR  +VVI  +  +A   ++ KTR GS LRAA ++P      GINVP +   T+A G G
Sbjct: 148 NYRAFVVVISLVACIATWALIEKTRLGSYLRAATENPTLVQAFGINVPVLLTLTYALGAG 207

Query: 89  LAGLGGALSAEILGLDPYFPLKFMIYFLIVVTVGGSSSITGPFLASLLLGIADVAGKYYV 148
           LAG  G L+A I  + P      +I    VV VGG  SI G  +   +LGIA+   K + 
Sbjct: 208 LAGFTGVLAAPIYQVSPLMGTNLIIVVFAVVVVGGMGSIMGAIVTGYMLGIAEGLTKVFY 267

Query: 149 PKLGPFVIYTVMIVILLWRPNGLFGRTA 176
           P+    VI+ +M  +LL RP GLFG+ A
Sbjct: 268 PEASNIVIFVIMAFVLLIRPAGLFGKDA 295