BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0250.0007.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2248 [E] COG0559 Branched-chain amino acid ABC-type transport...   138   3e-33
AGl704 [E] COG0559 Branched-chain amino acid ABC-type transport ...    97   1e-20
SMb20787 [E] COG0559 Branched-chain amino acid ABC-type transpor...    95   4e-20
BMEII0632 [E] COG0559 Branched-chain amino acid ABC-type transpo...    95   6e-20
RSc1751 [E] COG0559 Branched-chain amino acid ABC-type transport...    63   2e-10

>RSc2248 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Rso Ralstonia solanacearum
          Length = 289

 Score =  138 bits (348), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 76/137 (55%), Positives = 91/137 (66%), Gaps = 9/137 (6%)

Query: 1   MASILTNLFDGVAYGMLLFVLACGLAVTLGLMNFVNLAHGAFAMAGGYICAVLVNNSGWP 60
           M S L  LFDG+AYG LLF++  GL+VT+GLM F+NLAHGAFAMAGGY+C VL+N  G P
Sbjct: 1   MLSALGVLFDGLAYGCLLFLIGIGLSVTMGLMRFINLAHGAFAMAGGYVCVVLMNRLGMP 60

Query: 61  FFGGLPLXVEITARIVGGTLLTVIGVALERTLYRHLYSRSHLDQVLFSIGLVFMSVAAVD 120
           F   LP+    TA           G  LERTLYR LY  S LDQVLFSI LVFM++A   
Sbjct: 61  FLATLPIAFLATA---------AAGFVLERTLYRRLYRASPLDQVLFSIALVFMAMAGAT 111

Query: 121 YIMGSSRVFIKLPAALS 137
           Y+ G S+  ++LP AL 
Sbjct: 112 YVWGPSQQPVELPDALR 128


>AGl704 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 311

 Score = 96.7 bits (239), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 57/137 (41%), Positives = 80/137 (58%), Gaps = 9/137 (6%)

Query: 1   MASILTNLFDGVAYGMLLFVLACGLAVTLGLMNFVNLAHGAFAMAGGYICAVLVNNSGWP 60
           M ++ + L D +AYGM+LF+++ GL+VT+GLM  VNLAHGAFAM GGY+ +   +     
Sbjct: 25  MQTVFSILIDALAYGMVLFIISIGLSVTMGLMRVVNLAHGAFAMIGGYLASYAAHGL--- 81

Query: 61  FFGGLPLXVEITARIVGGTLLTVIGVALERTLYRHLYSRSHLDQVLFSIGLVFMSVAAVD 120
              GL   + I   IVG     VI + LER LYR +Y    L QVL +IG+ F  +   +
Sbjct: 82  ---GLGYAMAILVAIVG---TIVIAIPLERFLYRRIYGAPELTQVLMTIGITFCIIGIAN 135

Query: 121 YIMGSSRVFIKLPAALS 137
           Y+ G +   I LP  L+
Sbjct: 136 YVFGPTLKTIPLPQQLA 152


>SMb20787 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Sme Sinorhizobium meliloti
          Length = 287

 Score = 95.1 bits (235), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 55/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)

Query: 1   MASILTNLFDGVAYGMLLFVLACGLAVTLGLMNFVNLAHGAFAMAGGYICAVLVNNSGWP 60
           M +I +   D +AYG +LFV++ GL+VTLGLM  VNLAHGAFAM GGYI +    + G  
Sbjct: 1   MQTIFSIAVDALAYGTVLFVISIGLSVTLGLMRVVNLAHGAFAMIGGYIASYAARDLGLG 60

Query: 61  FFGGLPLXVEITARIVGGTLLTVIGVALERTLYRHLYSRSHLDQVLFSIGLVFMSVAAVD 120
           +  G  + + +   I       VI + +ER LYR +Y +  L QVL +IG+ F  +   +
Sbjct: 61  Y--GAAVLIAVFGTI-------VIAIPIERLLYRRIYGQPELTQVLMTIGITFCIIGIAN 111

Query: 121 YIMGSSRVFIKLPAALS 137
           Y+ G +   I LP +L 
Sbjct: 112 YVFGPTLKTIPLPPSLE 128


>BMEII0632 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Bme Brucella melitensis
          Length = 289

 Score = 94.7 bits (234), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/137 (40%), Positives = 79/137 (57%), Gaps = 9/137 (6%)

Query: 1   MASILTNLFDGVAYGMLLFVLACGLAVTLGLMNFVNLAHGAFAMAGGYICAVLVNNSGWP 60
           M ++L+   D +AYGM+LFV++ GL+VT+GLM  VNLAHGAFAM GGY  +      G  
Sbjct: 1   MQTVLSIAVDALAYGMVLFVISIGLSVTMGLMRVVNLAHGAFAMIGGYFASYAAQQLGLN 60

Query: 61  FFGGLPLXVEITARIVGGTLLTVIGVALERTLYRHLYSRSHLDQVLFSIGLVFMSVAAVD 120
           +  G  + + +      GT+  +I V +ER LYR +Y    L QVL +IG+ F  +   +
Sbjct: 61  Y--GFAIIIAVV-----GTM--IIAVPVERLLYRRIYGAPELTQVLMTIGVTFCIIGITN 111

Query: 121 YIMGSSRVFIKLPAALS 137
           YI G +   I LP  L 
Sbjct: 112 YIFGPTLKTIPLPEMLR 128


>RSc1751 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Rso Ralstonia solanacearum
          Length = 315

 Score = 63.2 bits (152), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/138 (30%), Positives = 69/138 (50%), Gaps = 13/138 (9%)

Query: 1   MASILTNLFDGVAYGMLLFVLACGLAVTLGLMNFVNLAHGAFAMAGGYICAVLVNNSG-W 59
           M  ++ NL +G++YG+LLF+L+ GL +   +M  +N AH +F M G Y   V+    G W
Sbjct: 1   MEFLVINLLNGISYGLLLFMLSSGLTLIFSMMGVLNFAHASFYMLGAYFAYVVSGYLGFW 60

Query: 60  PFFGGLPLXVEITARIVGGTLLTVIGVALERTLYRHLYSRSHLDQVLFSIGLVFMSVAAV 119
                        A IV   L+  +G  +ER   R ++   H+ ++LF+ GL ++    V
Sbjct: 61  ------------AALIVAPLLVGALGALVERFGLRTVHRYGHVAELLFTFGLAYLIEEGV 108

Query: 120 DYIMGSSRVFIKLPAALS 137
             + G   V  ++P AL 
Sbjct: 109 KLVWGLPAVPYRVPEALD 126