BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0043.p (318 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tr... 229 6e-60 AGl323 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 220 4e-57 BS_appB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 208 2e-53 jhp0284 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 205 8e-53 HP0299 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 205 1e-52 >BMEII0209 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bme Brucella melitensis Length = 315 Score = 229 bits (584), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 117/306 (38%), Positives = 186/306 (60%) Query: 12 SRLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIYGLDRPFLVQYG 71 R+ QA+PV+L+ + F L+KL+PGD A+ +AGD A+ + IR GLD+P +VQ G Sbjct: 8 KRVAQAIPVMLIVAILTFLLMKLLPGDPAILIAGDGASPETVERIRVELGLDQPTVVQLG 67 Query: 72 AWLGNVAQGDLSQSLLTGEKVADSIGRAFPNTLLIVVIALALALVTGIPMGVIAAIKPNG 131 WL N+ DL +S L + V+ +I P T+ + ++A A+ + GI MGV+AA + Sbjct: 68 QWLWNLFHFDLGRSFLLSQPVSQAIAERLPVTISLALLAFAITIPVGIIMGVVAAYLRDS 127 Query: 132 WVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATGAKSFSASPVDAIRHALLPGI 191 W D + LA LGV+VP FWLA++ V FS+ L W P+ G F SP+ +R +LP Sbjct: 128 WFDTGVMSLALLGVSVPSFWLAILAVILFSVTLGWFPSAGYVPFLDSPLGWLRSLILPAS 187 Query: 192 AIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSRILWQHGLKNVGVNLLTIVSLL 251 +A + + +AR R +LEV+ Y+RT +KG+S +L H +N V++LT+ + Sbjct: 188 ILALFQIGYLARMTRSEMLEVMDQDYIRTARSKGVSEYSVLSTHAFRNALVSVLTVSGYI 247 Query: 252 VNRMLAATVVIEAVFAIPGLGSLIVRGAIQRDFPIVQGVVFTMVVVVIAVNLVTDLLCAA 311 + ++ +VVIE +FA+PGLG L+V+ + RD P+VQG + + + +A+N++ D+L Sbjct: 248 FSLLIGGSVVIEQIFALPGLGRLLVQAILARDLPVVQGTMLFLGFLFVAINVLVDILYTI 307 Query: 312 VDPRIE 317 DPR+ Sbjct: 308 ADPRVR 313 >AGl323 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 328 Score = 220 bits (560), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 117/308 (37%), Positives = 186/308 (60%) Query: 10 VGSRLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIYGLDRPFLVQ 69 +G RL+ A+P +L+ + VF+L KL+PGD + +AG+ A I +R+ Y L+ P +Q Sbjct: 18 IGKRLLVAIPTLLIISIFVFSLQKLLPGDPVLAMAGEERDPATIEFLREKYRLNDPVPLQ 77 Query: 70 YGAWLGNVAQGDLSQSLLTGEKVADSIGRAFPNTLLIVVIALALALVTGIPMGVIAAIKP 129 Y WLG V GD SL T + V + IG+ P T+ + V+A+ A+V GIP+G++AA+K Sbjct: 78 YLNWLGGVVTGDFGISLRTNQPVLELIGQKLPVTIQLAVMAMFFAMVIGIPIGILAAVKK 137 Query: 130 NGWVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATGAKSFSASPVDAIRHALLP 189 N W+D +++A G+++P FWL ++L+ S+KL WLPA+G +S PV +I ++P Sbjct: 138 NTWIDYTANIVALSGLSIPNFWLGIMLILLVSVKLGWLPASGYESIFVDPVRSIETMIMP 197 Query: 190 GIAIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSRILWQHGLKNVGVNLLTIVS 249 + A + R R A++ VLSS Y+RT AKGLS I+ H +N + ++T+++ Sbjct: 198 AFVLGNALAATLMRHTRSAMVAVLSSDYIRTARAKGLSPREIILSHSFRNALLPVITLLA 257 Query: 250 LLVNRMLAATVVIEAVFAIPGLGSLIVRGAIQRDFPIVQGVVFTMVVVVIAVNLVTDLLC 309 LL +LA V+ E +F IPG G + V RD+ +VQG+V V I +NL+ D+ Sbjct: 258 LLFGELLAGAVLTEQIFTIPGFGKMTVDAVFTRDYAVVQGIVLCTAVGFILMNLLADIAY 317 Query: 310 AAVDPRIE 317 ++PR+ Sbjct: 318 VLLNPRLR 325 >BS_appB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bsu Bacillus subtilis Length = 317 Score = 208 bits (529), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/309 (35%), Positives = 178/309 (57%), Gaps = 4/309 (1%) Query: 13 RLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIYGLDRPFLVQYGA 72 R + ++P++L T + F ++K PGD + + A + + YGL+ P VQY Sbjct: 8 RTLMSIPILLGITILSFVIMKAAPGDPMTLMMDPKISQADREQFIEKYGLNDPQYVQYLK 67 Query: 73 WLGNVAQGDLSQSLL-TGEKVADSIGRAFPNTLLIVVIALALALVTGIPMGVIAAIKPNG 131 WLGN+ QGD S++ G V++ I PNTLL+++++ LAL+ IP GV++A +P Sbjct: 68 WLGNMVQGDFGTSIVRKGTPVSELIMARLPNTLLLMLVSTILALMISIPFGVLSAKRPYS 127 Query: 132 WVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATGAKSFSA--SPVDAIRHALLP 189 +D I+ + +G+A+P FW +IL+ S+ L W P G ++ + + D I H +LP Sbjct: 128 KIDYGITFTSFIGLAIPNFWFGLILIMVLSVNLGWFPTGGVETLNTEFNIFDRIHHLILP 187 Query: 190 GIAIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSRILWQHGLKNVGVNLLTIVS 249 +A MA + R R +L+VL+ Y+RT AKG +R+L++HGL+N + ++TI Sbjct: 188 AFVLATADMAGLTRYTRSNMLDVLNQDYIRTARAKGFKENRVLFKHGLRNALLPVITIFG 247 Query: 250 LLVNRMLAATVVIEAVFAIPGLGSLIVRGAIQRD-FPIVQGVVFTMVVVVIAVNLVTDLL 308 L++ + +VV+E +F PGLG L V A QR I+ + V+V+ NL+ D+L Sbjct: 248 LMIPSFIGGSVVVEQIFTWPGLGKLFVDSAFQRTIIRIIMAMTVISAVLVVVGNLIADIL 307 Query: 309 CAAVDPRIE 317 A VDPRIE Sbjct: 308 YAIVDPRIE 316 >jhp0284 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components jHp Helicobacter pylori J99 Length = 334 Score = 205 bits (522), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 118/326 (36%), Positives = 184/326 (56%), Gaps = 20/326 (6%) Query: 12 SRLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIYGLDRPFLVQYG 71 R++ A+P + + +VF ++ LVPGD A+ + G+ A A I +R+ +GL++P + QY Sbjct: 7 KRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGEKANQAAIDALREQFGLNKPLIEQYF 66 Query: 72 AWLGNVAQGDLSQSLLTGEKVADSIGRAFPNTLLIVVIALALALVTGIPMGVIAAIKPNG 131 ++ NV G+ S++TGE V + FP T+ + +IAL +ALV GI +GV+AAIK Sbjct: 67 FFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLAAIKRYS 126 Query: 132 WVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATGAKS---FSASP--------- 179 D A G+++P FWL ++L+ FS++L WLP G S + P Sbjct: 127 MFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGLYLIDSL 186 Query: 180 --------VDAIRHALLPGIAIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSRI 231 VD I+H +LP I +A A +AR R ++ EV YVRT AKG S R+ Sbjct: 187 IAGDYGAFVDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKGCSSFRV 246 Query: 232 LWQHGLKNVGVNLLTIVSLLVNRMLAATVVIEAVFAIPGLGSLIVRGAIQRDFPIVQGVV 291 ++ H L+N + + TI L++ +L +++ E VF+ PG+G IV QRDFPI+Q + Sbjct: 247 IFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFPIIQSMS 306 Query: 292 FTMVVVVIAVNLVTDLLCAAVDPRIE 317 + ++ I NL+ D+L A +DPRI Sbjct: 307 LIIAMMYIGANLLVDVLYAFIDPRIR 332 >HP0299 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Hpy Helicobacter pylori 26695 Length = 334 Score = 205 bits (521), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/327 (35%), Positives = 185/327 (56%), Gaps = 22/327 (6%) Query: 12 SRLVQALPVILLATFMVFALLKLVPGDIAVTLAGDNATDARITEIRKIYGLDRPFLVQYG 71 R++ A+P + + +VF ++ LVPGD A+ + G+ A A I +R+ +GL++P + QY Sbjct: 7 KRILWAIPTLFGVSIIVFMMVHLVPGDPALVILGEKANQAAIDALREQFGLNKPLIEQYF 66 Query: 72 AWLGNVAQGDLSQSLLTGEKVADSIGRAFPNTLLIVVIALALALVTGIPMGVIAAIKPNG 131 ++ NV G+ S++TGE V + FP T+ + +IAL +ALV GI +GV+AAIK Sbjct: 67 FFINNVLHGNFGTSIMTGEPVMHEFWQRFPATVELALIALFMALVLGISVGVLAAIKRYS 126 Query: 132 WVDKLISMLASLGVAVPGFWLAMILVAEFSLKLNWLPATG-------------------- 171 D A G+++P FWL ++L+ FS++L WLP G Sbjct: 127 VFDYSSMTFALAGISMPVFWLGLMLIYIFSVQLGWLPVFGRLSDVYYLDGPTGLYLIDSL 186 Query: 172 -AKSFSASPVDAIRHALLPGIAIAAYGMAEVARQLRGALLEVLSSQYVRTLHAKGLSMSR 230 A+ + A +D I+H +LP I +A A +AR R ++ EV YVRT AKG S R Sbjct: 187 IARDYGAF-MDTIKHLILPSIVLATVSTAVIARMTRASMAEVSKEDYVRTAKAKGCSSFR 245 Query: 231 ILWQHGLKNVGVNLLTIVSLLVNRMLAATVVIEAVFAIPGLGSLIVRGAIQRDFPIVQGV 290 +++ H L+N + + TI L++ +L +++ E VF+ PG+G IV QRDFPI+Q + Sbjct: 246 VIFVHTLRNALIPVTTIAGLMLAGLLGGSMITETVFSWPGIGKWIVNALNQRDFPIIQSM 305 Query: 291 VFTMVVVVIAVNLVTDLLCAAVDPRIE 317 + ++ I NL+ D+L A +DPRI Sbjct: 306 SLIIAMMYIGANLLVDILYAFIDPRIR 332