BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0249.0042.p (294 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 236 5e-62 AGl321 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 235 1e-61 yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transpo... 227 2e-59 Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transp... 227 3e-59 ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 227 3e-59 >BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Bha Bacillus halodurans Length = 301 Score = 236 bits (602), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 124/292 (42%), Positives = 180/292 (61%), Gaps = 1/292 (0%) Query: 2 TEVALAPLKAPARPTRLRRFARWLAGDLRAGLSILVLVVLVVVAIGAPWIAPYAPTAQDV 61 +E AP P R + F + LA + A + + +++ +VVA+ P+ + P +V Sbjct: 11 SEATAAPPPNP-RIQSWKNFYKKLAKNKAAMVGLSLIIFFIVVALIGPYFTTHDPYEPNV 69 Query: 62 NNMLAPPGPAHLLGTDDLGRDIFSRLIYGAPATVYASLLAVGVAVLIGLPVGLIAGYFGG 121 N LA P H GTD GRDIF+R+I+G T+Y +V + ++G+ +G+++GY+G Sbjct: 70 MNKLAEPSAEHWFGTDHHGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILGVVSGYYGR 129 Query: 122 WIDDIISRIIDTFLSFPAIVLAIAVTGALGIGLTNGMIAVGITMFPALARIVRARTLIVR 181 +D +I RI+D L+FP I+LA+A+ LG + N +IAVGI P ARIVR TL VR Sbjct: 130 LVDTVIMRIMDVLLAFPGILLALAIISILGGSINNVIIAVGIFSIPVFARIVRGSTLAVR 189 Query: 182 QELYVDASRGFGAPTWHVLWRHVLPNTLQPVIVQVTLLLAAALLAEASLSFLGLGIQPPD 241 + Y+DA + GA ++++H+LPN L P+IVQ TL +A ++L ++LSFLGLG QPP Sbjct: 190 KLEYIDAVKALGASDARIIFKHILPNVLSPIIVQGTLSIATSILTASALSFLGLGAQPPI 249 Query: 242 PSWGAMLARAYQYMEIAPEQMYAPGLAILIVSLAFNALGESLRVVLDPTMKD 293 P WGAML+ YM AP PGLAI++V LAFN G+ LR LDP K+ Sbjct: 250 PEWGAMLSDGRNYMYDAPHVALFPGLAIVVVVLAFNIFGDGLRDALDPKSKN 301 >AGl321 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 308 Score = 235 bits (599), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 125/274 (45%), Positives = 177/274 (64%), Gaps = 7/274 (2%) Query: 16 TRLRRFARWLAGDLRAGLSILVLVVLVVVAIGAPWIAPYAPTAQDVNNMLAPPGPAHLLG 75 +++R LAG +++++ V+AI AP + P A + + P AH LG Sbjct: 39 KKMKRNKSALAG-------LIIVLFFAVLAIAAPILPIADPVATSWSAIRKAPSAAHWLG 91 Query: 76 TDDLGRDIFSRLIYGAPATVYASLLAVGVAVLIGLPVGLIAGYFGGWIDDIISRIIDTFL 135 TDDLGRDI SR+IYGA A++ A +++V +AV+IG+P GLIAGYFGGW+D +ISRI + L Sbjct: 92 TDDLGRDILSRMIYGARASLMAGVVSVMIAVVIGVPFGLIAGYFGGWVDMVISRITEALL 151 Query: 136 SFPAIVLAIAVTGALGIGLTNGMIAVGITMFPALARIVRARTLIVRQELYVDASRGFGAP 195 + P +++AIA+ LG LTN MIA+G++ P R+ R + L V+ E YV+ +R G Sbjct: 152 AMPFLIMAIALAAFLGPSLTNAMIAIGLSAMPIFVRLTRGQVLAVKMEDYVEGARSIGLN 211 Query: 196 TWHVLWRHVLPNTLQPVIVQVTLLLAAALLAEASLSFLGLGIQPPDPSWGAMLARAYQYM 255 ++ R++LPN P+IVQ TL +A A++AEASLSFLGLG Q P PSWG+ML A ++ Sbjct: 212 HIDIMTRYILPNVFAPIIVQATLTVATAIIAEASLSFLGLGQQAPAPSWGSMLNTAKNFL 271 Query: 256 EIAPEQMYAPGLAILIVSLAFNALGESLRVVLDP 289 AP PG+AI +V + FN LG+ LR LDP Sbjct: 272 SQAPWMTLWPGIAIFLVVIGFNLLGDGLRDALDP 305 >yliD [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Eco Escherichia coli K12 Length = 303 Score = 227 bits (579), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 127/275 (46%), Positives = 171/275 (62%), Gaps = 5/275 (1%) Query: 19 RRFARWLAGDLRAGLSILVLVVLVVVAIGAPWIAPY-APTAQDVNNMLAPPGPAHLLGTD 77 RRF R A + L +++L+VVAI A WIAPY A D +N+ P H G D Sbjct: 32 RRFRR----QHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVD 87 Query: 78 DLGRDIFSRLIYGAPATVYASLLAVGVAVLIGLPVGLIAGYFGGWIDDIISRIIDTFLSF 137 LGRDIFSR++ GA ++ A + AV + IG +GL+AGY+ GW D +I RI D +F Sbjct: 88 SLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAF 147 Query: 138 PAIVLAIAVTGALGIGLTNGMIAVGITMFPALARIVRARTLIVRQELYVDASRGFGAPTW 197 P I+LAIAV LG G+ N +IAV I PA AR+VR TL+++Q+ +++++R GA Sbjct: 148 PGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDM 207 Query: 198 HVLWRHVLPNTLQPVIVQVTLLLAAALLAEASLSFLGLGIQPPDPSWGAMLARAYQYMEI 257 VL RH+LP T+ ++V T+ + ++++ ASLSFLGLG QPP P WGAML A M I Sbjct: 208 TVLLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVI 267 Query: 258 APEQMYAPGLAILIVSLAFNALGESLRVVLDPTMK 292 AP P LAI + LAFN LG+ LR LDP +K Sbjct: 268 APHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >Z1056 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components EcZ Escherichia coli O157:H7 EDL933 Length = 303 Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 126/275 (45%), Positives = 171/275 (62%), Gaps = 5/275 (1%) Query: 19 RRFARWLAGDLRAGLSILVLVVLVVVAIGAPWIAPY-APTAQDVNNMLAPPGPAHLLGTD 77 RRF R A + L +++L+VVAI A WIAPY A D +N+ P H G D Sbjct: 32 RRFRR----QHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVD 87 Query: 78 DLGRDIFSRLIYGAPATVYASLLAVGVAVLIGLPVGLIAGYFGGWIDDIISRIIDTFLSF 137 LGRDIFSR++ GA ++ A + AV + IG +GL+AGY+ GW D +I RI D +F Sbjct: 88 SLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAF 147 Query: 138 PAIVLAIAVTGALGIGLTNGMIAVGITMFPALARIVRARTLIVRQELYVDASRGFGAPTW 197 P I+LAIAV LG G+ N +IAV I PA AR+VR TL+++Q+ +++++R GA Sbjct: 148 PGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDM 207 Query: 198 HVLWRHVLPNTLQPVIVQVTLLLAAALLAEASLSFLGLGIQPPDPSWGAMLARAYQYMEI 257 +L RH+LP T+ ++V T+ + ++++ ASLSFLGLG QPP P WGAML A M I Sbjct: 208 TILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVI 267 Query: 258 APEQMYAPGLAILIVSLAFNALGESLRVVLDPTMK 292 AP P LAI + LAFN LG+ LR LDP +K Sbjct: 268 APHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302 >ECs0911 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Ecs Escherichia coli O157:H7 Length = 303 Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 126/275 (45%), Positives = 171/275 (62%), Gaps = 5/275 (1%) Query: 19 RRFARWLAGDLRAGLSILVLVVLVVVAIGAPWIAPY-APTAQDVNNMLAPPGPAHLLGTD 77 RRF R A + L +++L+VVAI A WIAPY A D +N+ P H G D Sbjct: 32 RRFRR----QHMAMTAALFVILLIVVAIFARWIAPYDAENYFDYDNLNNGPSLQHWFGVD 87 Query: 78 DLGRDIFSRLIYGAPATVYASLLAVGVAVLIGLPVGLIAGYFGGWIDDIISRIIDTFLSF 137 LGRDIFSR++ GA ++ A + AV + IG +GL+AGY+ GW D +I RI D +F Sbjct: 88 SLGRDIFSRVLVGAQISLAAGVFAVFIGAAIGTLLGLLAGYYEGWWDRLIMRICDVLFAF 147 Query: 138 PAIVLAIAVTGALGIGLTNGMIAVGITMFPALARIVRARTLIVRQELYVDASRGFGAPTW 197 P I+LAIAV LG G+ N +IAV I PA AR+VR TL+++Q+ +++++R GA Sbjct: 148 PGILLAIAVVAVLGSGIANVIIAVAIFSIPAFARLVRGNTLVLKQQTFIESARSIGASDM 207 Query: 198 HVLWRHVLPNTLQPVIVQVTLLLAAALLAEASLSFLGLGIQPPDPSWGAMLARAYQYMEI 257 +L RH+LP T+ ++V T+ + ++++ ASLSFLGLG QPP P WGAML A M I Sbjct: 208 TILLRHILPGTVSSIVVFFTMRIGTSIISAASLSFLGLGAQPPTPEWGAMLNEARADMVI 267 Query: 258 APEQMYAPGLAILIVSLAFNALGESLRVVLDPTMK 292 AP P LAI + LAFN LG+ LR LDP +K Sbjct: 268 APHVAVFPALAIFLTVLAFNLLGDGLRDALDPKIK 302