BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0249.0012.p         (144 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc1754 [E] COG0410 ABC-type branched-chain amino acid transport...   117   8e-27
Cj1014c [E] COG0410 ABC-type branched-chain amino acid transport...   114   7e-26
SP0753 [E] COG0410 ABC-type branched-chain amino acid transport ...   113   2e-25
BMEII0065 [E] COG0410 ABC-type branched-chain amino acid transpo...   112   2e-25
YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport...   112   3e-25

>RSc1754 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Rso Ralstonia solanacearum
          Length = 239

 Score =  117 bits (293), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 86/139 (61%), Gaps = 4/139 (2%)

Query: 6   GASSXPPQPKRPGAPQWDREKLFKLFPNLGEMRGRPGGRMSGGEQQMLAIARTLMGNPSL 65
           G    P QP+    P+W  + +++LFP L E    P G +SGGEQQML + RTLMG+P  
Sbjct: 105 GEKRNPRQPR----PRWQFDDMYRLFPRLKEREHTPAGVLSGGEQQMLTLCRTLMGDPDF 160

Query: 66  VLLDEPSEGLSPKIVEQMVDAILAMKKEGVSIVVSEQNLHFARLISDRAYIIERGRICFG 125
           V++DEP+EGL+P IV Q+ + +  +K  G+S+++ EQ L  A  IS R Y++  G+I F 
Sbjct: 161 VIIDEPTEGLAPLIVAQVGEYLKTLKARGISVLLVEQKLAIALDISQRVYVMGHGQIVFE 220

Query: 126 GTMAELDARPDIRDAHLSL 144
           GT A+L A   +R   L +
Sbjct: 221 GTPADLKADARVRQEWLEV 239


>Cj1014c [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Cje Campylobacter jejuni
          Length = 231

 Score =  114 bits (285), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 57/121 (47%), Positives = 80/121 (66%)

Query: 24  REKLFKLFPNLGEMRGRPGGRMSGGEQQMLAIARTLMGNPSLVLLDEPSEGLSPKIVEQM 83
           RE+++KLFP L   +    G +SGGE QMLAI+R LM  P L++LDEPS GL+PKIV ++
Sbjct: 111 REQMYKLFPRLASKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSLGLAPKIVGEV 170

Query: 84  VDAILAMKKEGVSIVVSEQNLHFARLISDRAYIIERGRICFGGTMAELDARPDIRDAHLS 143
            D I+ +K+EG++I++ EQN + A  ISD AY++E GRI        L    +IR  +L 
Sbjct: 171 FDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNLIGDDEIRKKYLG 230

Query: 144 L 144
           L
Sbjct: 231 L 231


>SP0753 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Spn Streptococcus pneumoniae TIGR4
          Length = 236

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 54/122 (44%), Positives = 81/122 (66%)

Query: 21  QWDREKLFKLFPNLGEMRGRPGGRMSGGEQQMLAIARTLMGNPSLVLLDEPSEGLSPKIV 80
           Q + +K+F  FP L E + +    +SGGEQQMLA+ R LM  P L+LLDEPS GL+P  +
Sbjct: 113 QANLKKVFSRFPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFI 172

Query: 81  EQMVDAILAMKKEGVSIVVSEQNLHFARLISDRAYIIERGRICFGGTMAELDARPDIRDA 140
           +++ D I  ++K+G ++++ EQN + A  ISDR Y++E GRI   GT  EL +  ++R A
Sbjct: 173 QEIFDIIQDIQKQGTTVLLIEQNANKALAISDRGYVLETGRIVLSGTGKELASSEEVRKA 232

Query: 141 HL 142
           +L
Sbjct: 233 YL 234


>BMEII0065 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Bme Brucella melitensis
          Length = 238

 Score =  112 bits (281), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 57/127 (44%), Positives = 82/127 (64%)

Query: 18  GAPQWDREKLFKLFPNLGEMRGRPGGRMSGGEQQMLAIARTLMGNPSLVLLDEPSEGLSP 77
           GA +W  E++F  FP L E R    G +SGGEQQML + RTL+GNP ++L+DEP+EGL+P
Sbjct: 112 GATRWTVEQMFDYFPRLKERRNTRAGSLSGGEQQMLTMCRTLLGNPLVMLIDEPTEGLAP 171

Query: 78  KIVEQMVDAILAMKKEGVSIVVSEQNLHFARLISDRAYIIERGRICFGGTMAELDARPDI 137
           KIV  + + I  + ++GVS+V+ EQ L  A  +S R  ++  GRI F GT  EL A   +
Sbjct: 172 KIVAVVGEMIKDINRQGVSVVLVEQKLTIALKVSSRVCVMGHGRIVFEGTPDELTADEKL 231

Query: 138 RDAHLSL 144
            +  L++
Sbjct: 232 MEEWLAV 238


>YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport systems,
           ATPase component Ype Yersinia pestis
          Length = 233

 Score =  112 bits (280), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 58/118 (49%), Positives = 79/118 (66%)

Query: 25  EKLFKLFPNLGEMRGRPGGRMSGGEQQMLAIARTLMGNPSLVLLDEPSEGLSPKIVEQMV 84
           E+++ LFP L E R +  G MSGGEQQMLAI R LM  P L+LLDEPS GL+P I+ Q+ 
Sbjct: 114 ERVYDLFPRLFERRIQRAGTMSGGEQQMLAIGRALMSQPKLLLLDEPSLGLAPIIILQIF 173

Query: 85  DAILAMKKEGVSIVVSEQNLHFARLISDRAYIIERGRICFGGTMAELDARPDIRDAHL 142
           D I  +++EG++I + EQN + A  ++DR Y++E GRI    T A L A   +R A+L
Sbjct: 174 DTIQQLREEGMTIFLVEQNANQALKLADRGYVLENGRIVLEDTGAALLANEAVRSAYL 231