BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0037.p (251 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc3874 [K] COG1309 Transcriptional regulator Atu Agrobacterium ... 115 1e-25 SMa1299 [K] COG1309 Transcriptional regulator Sme Sinorhizobium ... 108 8e-24 STM1213 [K] COG1309 Transcriptional regulator Sty Salmonella typ... 96 1e-19 VCA0586 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae 93 6e-19 ZycfQ [K] COG1309 Transcriptional regulator EcZ Escherichia coli... 89 7e-18 >AGc3874 [K] COG1309 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 240 Score = 115 bits (288), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 71/193 (36%), Positives = 105/193 (54%), Gaps = 4/193 (2%) Query: 44 YISAMSRQTPVQSP----RGRPRSFDTEAAVERAMNVFWSRGYHATALPDLLRATKLSRG 99 YI+ M+ T S RGRPR FD + A++ A+ VF RGYHAT++ DL A +L++G Sbjct: 30 YIAFMTNTTQTHSQEQRHRGRPREFDLDRALDGAIRVFSRRGYHATSVGDLTDAMELAQG 89 Query: 100 SLYAAFGDKHSLFLRALDRYIADAVTRMDDELDPGRDPVDGLRAYLAGYVERTCGANGRR 159 SLY AF DK ++F+ ++RY R + + G + LRA L Y ER+ G G Sbjct: 90 SLYKAFKDKKAIFIATMERYRIVQTERFEAAVAGGETGYERLRAGLMFYAERSHGGVGSD 149 Query: 160 GCLLVATAMELAGQDAEVGRRFASFFKTMEARVADAFSRAETAGKLAAGVEPSSAARILI 219 GCL+V A +LA D ++ K E VA + + G + + +P AR ++ Sbjct: 150 GCLVVGAAADLAALDDDIAVVVERAVKARERIVARIITEGQKDGSVHSTADPDDLARAML 209 Query: 220 CFLWGLRVVAKTA 232 C ++G+RVV KT Sbjct: 210 CMMYGMRVVGKTG 222 >SMa1299 [K] COG1309 Transcriptional regulator Sme Sinorhizobium meliloti Length = 203 Score = 108 bits (271), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 6/191 (3%) Query: 59 GRPRSFDTEAAVERAMNVFWSRGYHATALPDLLRATKLSRGSLYAAFGDKHSLFLRALDR 118 GRPR FD A++ A+ +F +GYH T++ +L L+ GS+Y AF DK +F+ A DR Sbjct: 12 GRPREFDINQALDAAIRIFSEKGYHGTSIAELKTEMGLTAGSIYKAFRDKRDVFVAAYDR 71 Query: 119 YIADAVTRMDDEL---DPGRDPVDGLRAYLAGYVERTCGANGRRGCLLVATAMELAGQDA 175 Y +D L GR+ + + + Y CG GRRGCL + A+EL DA Sbjct: 72 YKQIRADLLDQALFSASTGREKIARVVGF---YAMSACGETGRRGCLAIGAAVELVLSDA 128 Query: 176 EVGRRFASFFKTMEARVADAFSRAETAGKLAAGVEPSSAARILICFLWGLRVVAKTAPAR 235 E+ R + + AR+ + G + V+P++ A L +L G+R+ KTA Sbjct: 129 EIADRVGRHNRKLVARLEGFIRDGQLDGSIRQDVDPAATALALFSYLQGVRIAGKTAELE 188 Query: 236 TTSQATADALL 246 +A+A+L Sbjct: 189 NQMLPSAEAVL 199 >STM1213 [K] COG1309 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 211 Score = 95.5 bits (236), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/177 (30%), Positives = 85/177 (48%), Gaps = 1/177 (0%) Query: 55 QSPRGRPRSFDTEAAVERAMNVFWSRGYHATALPDLLRATKLSRGSLYAAFGDKHSLFLR 114 + RGRP+ FD EAA+++AM +FW GY AT+L DL+ AT +LYA F +K LF Sbjct: 10 KKSRGRPKVFDREAALDKAMTLFWQHGYEATSLADLVEATGAKAPTLYAEFTNKKGLFRA 69 Query: 115 ALDRYIADAVTRMDDELDPGRDPVD-GLRAYLAGYVERTCGANGRRGCLLVATAMELAGQ 173 LDRYI ++ + +L V+ L Y + GC ++ T+ LA Sbjct: 70 VLDRYITRFASKHEAQLFCEEKSVESALEDYFTEIAACFTSTDTPAGCFMINTSATLAAS 129 Query: 174 DAEVGRRFASFFKTMEARVADAFSRAETAGKLAAGVEPSSAARILICFLWGLRVVAK 230 ++ R S E + + + G++ A P + A + C L G+ + A+ Sbjct: 130 SRDIARTVKSRHAMQEQTLIQFLRQRQERGEIPAHCNPQALAEYINCILQGMSISAR 186 >VCA0586 [K] COG1309 Transcriptional regulator Vch Vibrio cholerae Length = 198 Score = 92.8 bits (229), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 58/173 (33%), Positives = 91/173 (52%), Gaps = 6/173 (3%) Query: 60 RPRSFDTEAAVERAMNVFWSRGYHATALPDLLRATKLSRGSLYAAFGDKHSLFLRALDRY 119 R +FD E + +AM +FW +GY TA+ DL+ +++R SLY AFGDK L+ ALDRY Sbjct: 3 RKCNFDREEKLHQAMTLFWQKGYANTAISDLVDHLQINRFSLYNAFGDKQKLYYEALDRY 62 Query: 120 --IADAVTRMDDELDPGRDPVDGLRAYLAGYVERTCGANGRRGCLLVATAMELAGQDAEV 177 + + D EL+ P L+A+L + G RGC + +E A D EV Sbjct: 63 LNLVSSPALKDLELESAAWP--ELKAFLQHFA--ALQREGNRGCFMQNALVEHADTDDEV 118 Query: 178 GRRFASFFKTMEARVADAFSRAETAGKLAAGVEPSSAARILICFLWGLRVVAK 230 + + F + +A A + A G++AA + S A +++ + G+RV+ K Sbjct: 119 LNKGHALFDHLLHLIARALNNAIQQGQIAAHLCADSLAPLVLTQMQGMRVLGK 171 >ZycfQ [K] COG1309 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 236 Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 85/187 (45%), Gaps = 1/187 (0%) Query: 45 ISAMSRQTPVQSPRGRPRSFDTEAAVERAMNVFWSRGYHATALPDLLRATKLSRGSLYAA 104 I A V+ RGRP+ FD +AA+++AM +FW GY AT+L DL+ AT +LYA Sbjct: 26 IMATDSTQCVKKSRGRPKVFDRDAALDKAMKLFWQHGYEATSLADLVEATGAKAPTLYAE 85 Query: 105 FGDKHSLFLRALDRYIADAVTRMDDELDPGRDPVD-GLRAYLAGYVERTCGANGRRGCLL 163 F +K LF LDRYI + + +L V+ L Y A G + GC + Sbjct: 86 FTNKEGLFRAVLDRYIDRFAAKHEAQLFCEEKSVESALADYFAAIANCFTGKDTPAGCFM 145 Query: 164 VATAMELAGQDAEVGRRFASFFKTMEARVADAFSRAETAGKLAAGVEPSSAARILICFLW 223 + L+ ++ S E + + + G++ + + A L C + Sbjct: 146 INNCTTLSPDSGDIANTLKSRHAMQERTLQQFLCQRQARGEIPTHCDVTHLAEFLNCIIQ 205 Query: 224 GLRVVAK 230 G+ + A+ Sbjct: 206 GMSISAR 212