BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0248.0031.p         (211 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2908 Non COG                                                       141   1e-33
VC1288 [P] COG3131 Periplasmic glucans biosynthesis protein Vch ...   134   2e-31
STM1150 [P] COG3131 Periplasmic glucans biosynthesis protein Sty...   124   2e-28
ZmdoG [P] COG3131 Periplasmic glucans biosynthesis protein EcZ E...   123   3e-28
ECs1426 [P] COG3131 Periplasmic glucans biosynthesis protein Ecs...   123   3e-28

>RSc2908 Non COG
          Length = 504

 Score =  141 bits (355), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 68/137 (49%), Positives = 88/137 (64%), Gaps = 1/137 (0%)

Query: 6   ARNLASKSFEAPDEKLPNGLTDLNYDQYRSIRFASERALWRGAKLPFEAQFFHRGFFYKN 65
           A+ LA+K ++AP + LP+ L +L YDQYR IRF S++A WR  KLPFE  FFH G +Y  
Sbjct: 28  AKQLAAKPYQAPPDTLPHELRELRYDQYREIRFKSDQAYWRRDKLPFELGFFHEGSYYDQ 87

Query: 66  KVNIFEVADGKVSEVKYSKDMFSFGETVPDFTET-DLGFAGFRIHAPINKPDYYDEVCVF 124
            V I EV+     E+++   +F +G    D     +LGFAGFRIH P+N P Y DEV VF
Sbjct: 88  PVKINEVSPAGAREIRFDPRLFDYGPVKLDPKHLRNLGFAGFRIHYPMNTPKYKDEVIVF 147

Query: 125 LGASYFRAVAKDETYGF 141
           LGASYFR + K + YG 
Sbjct: 148 LGASYFRGIGKGQVYGL 164


>VC1288 [P] COG3131 Periplasmic glucans biosynthesis protein Vch Vibrio
           cholerae
          Length = 545

 Score =  134 bits (337), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 89/141 (63%), Gaps = 1/141 (0%)

Query: 2   VRELARNLASKSFEAPDEKLPNGLTDLNYDQYRSIRFASERALWRGAKLPFEAQFFHRGF 61
           V  LAR LA K + A  + LP  L +++YD+YR IRF  + A+W+   LP++ Q FHRGF
Sbjct: 77  VVRLARQLAKKPYVALKDPLPESLANISYDEYRDIRFKPDSAVWKADGLPYQMQLFHRGF 136

Query: 62  FYKNKVNIFEVADGKVSEVKYSKDMFSFGETVPDFTET-DLGFAGFRIHAPINKPDYYDE 120
           F+++ + I  V   + + + Y  +MF+ GE +     T D+G++G R+H P+N P Y+DE
Sbjct: 137 FFQDLIEIALVEGNQATHLSYDPNMFTAGEVLQQNLPTEDIGYSGLRVHYPLNSPSYFDE 196

Query: 121 VCVFLGASYFRAVAKDETYGF 141
           + VF GASYFRA+ K   YG 
Sbjct: 197 LFVFQGASYFRALGKGNAYGL 217


>STM1150 [P] COG3131 Periplasmic glucans biosynthesis protein Sty Salmonella
           typhimurium LT2
          Length = 511

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 2   VRELARNLASKSFEAPDEKLPNGLTDLNYDQYRSIRFASERALWRGAKLPFEAQFFHRGF 61
           V + A++LA K +EAP   LP+   D+ Y  Y+ I+F S++A W   K PF+ +F+H+G 
Sbjct: 28  VAKQAQSLAGKGYEAPKSNLPSVFRDMKYADYQQIQFNSDKAYWNNLKTPFKLEFYHQGM 87

Query: 62  FYKNKVNIFEVADGKVSEVKYSKDMFSFGETVPD-FTETDLGFAGFRIHAPINKPDYYDE 120
           ++   V I EV    V  +KYS D F+FG    D  T  DLGFAGF++  PIN  D  DE
Sbjct: 88  YFDTPVKINEVTATTVKRIKYSPDYFNFGNVQHDKDTVKDLGFAGFKVLYPINSKDKNDE 147

Query: 121 VCVFLGASYFRAVAKDETYGF 141
           +   LGASYFR +   + YG 
Sbjct: 148 IVSMLGASYFRVIGAGQVYGL 168


>ZmdoG [P] COG3131 Periplasmic glucans biosynthesis protein EcZ
           Escherichia coli O157:H7 EDL933
          Length = 511

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 2   VRELARNLASKSFEAPDEKLPNGLTDLNYDQYRSIRFASERALWRGAKLPFEAQFFHRGF 61
           V + A++LA K +EAP   LP+   D+ Y  Y+ I+F  ++A W   K PF+ +F+H+G 
Sbjct: 28  VAKQAQSLAGKGYEAPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGM 87

Query: 62  FYKNKVNIFEVADGKVSEVKYSKDMFSFGETVPD-FTETDLGFAGFRIHAPINKPDYYDE 120
           ++   V I EV    V  +KYS D F+FG+   D  T  DLGFAGF++  PIN  D  DE
Sbjct: 88  YFDTPVKINEVTATAVKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDE 147

Query: 121 VCVFLGASYFRAVAKDETYGF 141
           +   LGASYFR +   + YG 
Sbjct: 148 IVSMLGASYFRVIGAGQVYGL 168


>ECs1426 [P] COG3131 Periplasmic glucans biosynthesis protein Ecs
           Escherichia coli O157:H7
          Length = 511

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 59/141 (41%), Positives = 83/141 (58%), Gaps = 1/141 (0%)

Query: 2   VRELARNLASKSFEAPDEKLPNGLTDLNYDQYRSIRFASERALWRGAKLPFEAQFFHRGF 61
           V + A++LA K +EAP   LP+   D+ Y  Y+ I+F  ++A W   K PF+ +F+H+G 
Sbjct: 28  VAKQAQSLAGKGYEAPKSNLPSVFRDMKYADYQQIQFNHDKAYWNNLKTPFKLEFYHQGM 87

Query: 62  FYKNKVNIFEVADGKVSEVKYSKDMFSFGETVPD-FTETDLGFAGFRIHAPINKPDYYDE 120
           ++   V I EV    V  +KYS D F+FG+   D  T  DLGFAGF++  PIN  D  DE
Sbjct: 88  YFDTPVKINEVTATAVKRIKYSPDYFTFGDVQHDKDTVKDLGFAGFKVLYPINSKDKNDE 147

Query: 121 VCVFLGASYFRAVAKDETYGF 141
           +   LGASYFR +   + YG 
Sbjct: 148 IVSMLGASYFRVIGAGQVYGL 168