BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0021.p (226 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr7695 [TK] COG0745 Response regulators consisting of a CheY-li... 354 8e-98 BMEI1329 [TK] COG0745 Response regulators consisting of a CheY-l... 347 2e-95 AGc1793 [TK] COG0745 Response regulators consisting of a CheY-li... 344 1e-94 SMc02366 [TK] COG0745 Response regulators consisting of a CheY-l... 342 6e-94 CC2757 [TK] COG0745 Response regulators consisting of a CheY-lik... 285 8e-77 >mlr7695 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Mlo Mesorhizobium loti Length = 239 Score = 354 bits (909), Expect = 8e-98, Method: Compositional matrix adjust. Identities = 166/224 (74%), Positives = 195/224 (87%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 M+IL+IEDDRE+ADYL KAF E G+ A +A DGE G ++A+ GDYDV+V+DRM+P+RDGL Sbjct: 16 MKILVIEDDREAADYLQKAFTEAGHTAHVAGDGETGFALADAGDYDVMVIDRMMPRRDGL 75 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 S+I LR +GN TPVLILSALG+VDDR+ GLRAGGDDYL KPY+F+ELLARVEVL+RR Sbjct: 76 SVIAGLRSRGNTTPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLNRRAS 135 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 ET YRVGDLELDRLSH V R E+TLQPREFRLLEYLM+HAGQVVTRTMLLENVW Sbjct: 136 AKEAETVYRVGDLELDRLSHSVRRAAREITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 195 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDG 224 DYHFDPQTNVIDVH+SRLR KI+KGF++P+LHT+RGAGYM++ G Sbjct: 196 DYHFDPQTNVIDVHVSRLRGKIEKGFDKPILHTVRGAGYMLKGG 239 >BMEI1329 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Bme Brucella melitensis Length = 235 Score = 347 bits (889), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 168/224 (75%), Positives = 193/224 (86%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 M+IL+IEDDRE+A YL KAF E G+ AD+A DGE G ++AE G+YDVLVVDRMLPKRDGL Sbjct: 1 MKILVIEDDREAARYLEKAFAEAGHSADIAGDGETGYALAENGNYDVLVVDRMLPKRDGL 60 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 S++ LR KG TPVLILSALG+VDDR+ GLRAGGDDYL KPY+F+ELLARVEVL RR+ Sbjct: 61 SVVAGLRAKGMETPVLILSALGEVDDRVTGLRAGGDDYLTKPYAFSELLARVEVLQRRSS 120 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 +T YRVGDLELDRL+H R ++TLQPREFRLLEYLM+HAGQVVTRTMLLENVW Sbjct: 121 PREADTIYRVGDLELDRLTHTARRQSVDITLQPREFRLLEYLMRHAGQVVTRTMLLENVW 180 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRDG 224 DYHFDPQTNVIDVHISRLRSKI+KGF+ PLLHT+RGAGYM++ G Sbjct: 181 DYHFDPQTNVIDVHISRLRSKIEKGFDEPLLHTVRGAGYMLKAG 224 >AGc1793 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 252 Score = 344 bits (882), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 168/223 (75%), Positives = 190/223 (85%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 M+IL+IEDD E+A Y+ KAFRE G +AD ASDGE GL M YDVLV+DRMLP+RDGL Sbjct: 28 MKILVIEDDLEAAAYMTKAFREAGIVADHASDGESGLFMGCENAYDVLVIDRMLPRRDGL 87 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 S+I LR +G TPVLILSALGQVDDR+ GLRAGGDDYLPKPY+F+ELLAR+EVL RR Sbjct: 88 SVISELRRRGIETPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARIEVLGRRKG 147 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 P ++ YRVGDLELDRLSH V RG E+ LQPREFRLLEYLMK+AGQVVTRTMLLENVW Sbjct: 148 KPEQDMIYRVGDLELDRLSHDVRRGGKEILLQPREFRLLEYLMKNAGQVVTRTMLLENVW 207 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRD 223 DYHFDPQTNVIDVH+SRLRSKI+K FE+PLL TIRGAGYM++D Sbjct: 208 DYHFDPQTNVIDVHVSRLRSKIEKDFEKPLLKTIRGAGYMMKD 250 >SMc02366 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sme Sinorhizobium meliloti Length = 233 Score = 342 bits (876), Expect = 6e-94, Method: Compositional matrix adjust. Identities = 171/223 (76%), Positives = 187/223 (83%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 M+ILI+EDD E+A YL KAFRE G + D ASDGE GL MA YDVLVVDRMLP+RDGL Sbjct: 5 MKILIVEDDLEAAAYLAKAFREAGIVCDHASDGESGLFMASENAYDVLVVDRMLPRRDGL 64 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 SLI LR K TPVLILSALGQVDDR+ GLRAGGDDYLPKPY+F+ELLARVEVL RR Sbjct: 65 SLITELRRKDIHTPVLILSALGQVDDRVTGLRAGGDDYLPKPYAFSELLARVEVLGRRKG 124 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 P ++ YRVGDLELDRLSH V R E+ LQPREFRLLEYLMK+AGQVVTRTMLLENVW Sbjct: 125 APEQDMVYRVGDLELDRLSHSVRRQGKEIPLQPREFRLLEYLMKNAGQVVTRTMLLENVW 184 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGYMIRD 223 DYHFDPQTNVIDVH+SRLRSKI+K F+ PLL TIRGAGYMI+D Sbjct: 185 DYHFDPQTNVIDVHVSRLRSKIEKDFDPPLLRTIRGAGYMIKD 227 >CC2757 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ccr Caulobacter vibrioides Length = 223 Score = 285 bits (728), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 138/219 (63%), Positives = 174/219 (79%) Query: 1 MRILIIEDDRESADYLVKAFREVGYIADLASDGEEGLSMAETGDYDVLVVDRMLPKRDGL 60 MRILIIEDD E+A + +E GY A DGE GL+ A+ G +DVLVVDRM+PK DG+ Sbjct: 1 MRILIIEDDLEAAGAMAHGLKEAGYDVAHAPDGEAGLAEAQKGGWDVLVVDRMMPKMDGV 60 Query: 61 SLIGSLRDKGNRTPVLILSALGQVDDRIKGLRAGGDDYLPKPYSFAELLARVEVLSRRNV 120 +++ +LR +G++TPVL LSALG+V+DR+ GL+AG DDYL KPY+F EL+ARVE LSRR Sbjct: 61 TVVETLRREGDQTPVLFLSALGEVNDRVVGLKAGADDYLVKPYAFPELMARVEALSRRRE 120 Query: 121 GPAEETTYRVGDLELDRLSHRVARGKDELTLQPREFRLLEYLMKHAGQVVTRTMLLENVW 180 A TT +VG+LE++ ++ V R E+ LQPREF+LLE++M+HAGQ VTRTMLLE VW Sbjct: 121 TGAVATTLKVGELEMNLINRTVHRQGKEIDLQPREFQLLEFMMRHAGQSVTRTMLLEKVW 180 Query: 181 DYHFDPQTNVIDVHISRLRSKIDKGFERPLLHTIRGAGY 219 +YHFDPQTNVIDVHISRLRSKIDKGF+R +L T+RGAGY Sbjct: 181 EYHFDPQTNVIDVHISRLRSKIDKGFDRAMLQTVRGAGY 219