BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0248.0018.p         (137 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SMc02363 [O] COG1138 Cytochrome c biogenesis factor Sme Sinorhiz...   134   4e-32
AGc1787 [O] COG1138 Cytochrome c biogenesis factor Atu Agrobacte...   129   3e-30
BMEI1332 [O] COG1138 Cytochrome c biogenesis factor Bme Brucella...   121   5e-28
mlr7690 [O] COG1138 Cytochrome c biogenesis factor Mlo Mesorhizo...   110   6e-25
PM0010 [O] COG1138 Cytochrome c biogenesis factor Pmu Pasteurell...    90   1e-18

>SMc02363 [O] COG1138 Cytochrome c biogenesis factor Sme Sinorhizobium
           meliloti
          Length = 676

 Score =  134 bits (338), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 71/134 (52%), Positives = 89/134 (66%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQFTVTRDGEKVSVMTPSKRNFTTRGAST 60
           MKP  V  V  Y LR DG+   +GPN+ E    FTV+R G +V+ +  SKR ++ R   T
Sbjct: 524 MKPGAVVDVGRYSLRFDGMREGRGPNYTEDAGHFTVSRGGVEVTEIWSSKRLYSARRMPT 583

Query: 61  TEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRLR 120
           TEA + T G SQLY+SLGD  ADG I VRI+ KPL+L IW G ++M  GG++SLSDRRLR
Sbjct: 584 TEAGIRTFGLSQLYVSLGDDMADGGIVVRIWWKPLILCIWGGALVMMAGGVVSLSDRRLR 643

Query: 121 VGAPKPAKAARALQ 134
           VGAP  A+ A AL 
Sbjct: 644 VGAPARARKALALD 657


>AGc1787 [O] COG1138 Cytochrome c biogenesis factor Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 663

 Score =  129 bits (323), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 72/141 (51%), Positives = 88/141 (62%), Gaps = 5/141 (3%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQFTVTRDGEKVSVMTPSKRNFTTRGAST 60
           MK   VA   GY L  DG+    GPNF E    FTV + G +V+ +  SKR +T R   T
Sbjct: 524 MKQGTVAEAGGYSLTFDGIRHAVGPNFTEDRGHFTVRKAGVEVADVWSSKRLYTARRMPT 583

Query: 61  TEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRLR 120
           TEA ++T G SQLY+SLGD  ADG + VRI+ KP +L IW G + M  GG +SLSDRRLR
Sbjct: 584 TEAGILTFGLSQLYVSLGDPMADGGMVVRIWWKPFILCIWGGTLFMMAGGFISLSDRRLR 643

Query: 121 VGAP----KPAKAARALQAAE 137
           VGAP    KP +AA   +AAE
Sbjct: 644 VGAPTRKAKPVRAAMP-EAAE 663


>BMEI1332 [O] COG1138 Cytochrome c biogenesis factor Bme Brucella melitensis
          Length = 663

 Score =  121 bits (303), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 60/129 (46%), Positives = 82/129 (63%), Gaps = 1/129 (0%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQFTVT-RDGEKVSVMTPSKRNFTTRGAS 59
           M+P   A+V  Y LR +GL P  G NF E    FT+    G  ++V+ PSKR F  R   
Sbjct: 524 MQPGGTAKVQNYTLRFEGLRPITGSNFTENRGAFTLLDSSGRDLAVIEPSKRFFPARQMP 583

Query: 60  TTEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRL 119
           TTE+ + T   SQ+Y++LGD   +GA+ VRI+ KPLV +IW+G ++M  GG+ SL+DRRL
Sbjct: 584 TTESGIKTLWFSQVYVALGDEPGNGAVVVRIWWKPLVTLIWYGALVMMLGGLFSLADRRL 643

Query: 120 RVGAPKPAK 128
           RVGAP   +
Sbjct: 644 RVGAPSKVR 652


>mlr7690 [O] COG1138 Cytochrome c biogenesis factor Mlo Mesorhizobium loti
          Length = 663

 Score =  110 bits (276), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 57/126 (45%), Positives = 80/126 (63%), Gaps = 1/126 (0%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQF-TVTRDGEKVSVMTPSKRNFTTRGAS 59
           M+  +   ++G+ LR  GL P QGPN+ E   +F  +   G  V  M+ +KR +  R  +
Sbjct: 523 MRAGETVELSGHTLRFVGLYPAQGPNYSEDRGRFELIGVGGSPVGEMSSAKRFYPVRQTT 582

Query: 60  TTEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRL 119
           TTE+ + T G SQLYISLGD + DG++ VR++ KPLV +IW G ++M  G  +SL DRRL
Sbjct: 583 TTESGIRTLGLSQLYISLGDEAKDGSVVVRLWWKPLVTLIWGGGLMMMAGAAMSLMDRRL 642

Query: 120 RVGAPK 125
           RVGAP 
Sbjct: 643 RVGAPS 648


>PM0010 [O] COG1138 Cytochrome c biogenesis factor Pmu Pasteurella
           multocida
          Length = 651

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 67/122 (54%)

Query: 1   MKPDDVARVAGYQLRLDGLNPRQGPNFREMVAQFTVTRDGEKVSVMTPSKRNFTTRGAST 60
           M   D  ++A YQ    G+    GPN+    AQ  + R+G+  +++   KR +T    + 
Sbjct: 522 MNVGDSVQIADYQFTFQGITEANGPNYLGGKAQVDIRRNGQVEAILFAEKRFYTVSKMTM 581

Query: 61  TEAALMTRGASQLYISLGDTSADGAIAVRIYHKPLVLMIWWGPVLMAFGGMLSLSDRRLR 120
           TEAA+       +Y++LG+     A A+R+Y+KP +  IW+G V MA GG+L + DRR R
Sbjct: 582 TEAAIDWGFTRDIYVALGENLGQDAWALRLYYKPFIRWIWFGGVFMALGGLLCMFDRRYR 641

Query: 121 VG 122
            G
Sbjct: 642 FG 643