BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0009.p (240 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ydjK [GEPR] COG0477 Permeases of the major facilitator superfami... 116 6e-26 Z2813 [GEPR] COG0477 Permeases of the major facilitator superfam... 114 2e-25 ECs2484 [GEPR] COG0477 Permeases of the major facilitator superf... 114 2e-25 ydjE [GEPR] COG0477 Permeases of the major facilitator superfami... 108 9e-24 ZydjE [GEPR] COG0477 Permeases of the major facilitator superfam... 108 1e-23 >ydjK [GEPR] COG0477 Permeases of the major facilitator superfamily Eco Escherichia coli K12 Length = 459 Score = 116 bits (290), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 69/204 (33%), Positives = 110/204 (53%), Gaps = 4/204 (1%) Query: 1 MQAIEKEA--SQGQPLP--APAAATPAPVSPDLATLFAAPLLSRMIVGAVCLITINTLLY 56 M++IE+ G+PLP A AP + + L LL R+I+G+ LI +N + Y Sbjct: 222 MRSIEEGVIRQTGKPLPPVVIADDGKAPQAVPYSALLTGVLLKRVILGSCVLIAMNVVQY 281 Query: 57 GFVTWLPVFFIKQGLSVATSFGYSLLMALGAPIGSAIGALTADRWGRKPTIIGASLISII 116 + WLP F+ QG+++ S + + GAP G I L D+ RK +G ++ + Sbjct: 282 TLINWLPTIFMTQGINLKDSIVLNTMSMFGAPFGIFIAMLVMDKIPRKTMGVGLLILIAV 341 Query: 117 LGVIYPMISDPFLLPAVGFALTVPIYVLVALLFGIYIPELFPTEVRLRASGIVNTLGRGA 176 LG IY + + L+ +GF L +Y+ V +Y+PE++PTE +LR SG+ N +GR + Sbjct: 342 LGYIYSLQTSMLLITLIGFFLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRIS 401 Query: 177 TIVTPFLVVMLFEARGVAGVMALM 200 I P+ V +L + GV GV L+ Sbjct: 402 GIAAPYAVAVLLSSYGVTGVFILL 425 >Z2813 [GEPR] COG0477 Permeases of the major facilitator superfamily EcZ Escherichia coli O157:H7 EDL933 Length = 459 Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 109/204 (53%), Gaps = 4/204 (1%) Query: 1 MQAIEKEA--SQGQPLP--APAAATPAPVSPDLATLFAAPLLSRMIVGAVCLITINTLLY 56 M++IE+ G+PLP A AP + + L LL R+I+G+ LI +N + Y Sbjct: 222 MRSIEEGVIRHTGKPLPPVVIADDGKAPQAVPYSALLTGVLLKRVILGSCVLIAMNVVQY 281 Query: 57 GFVTWLPVFFIKQGLSVATSFGYSLLMALGAPIGSAIGALTADRWGRKPTIIGASLISII 116 + WLP F+ QG+++ S + + G P G I L D+ RK +G ++ + Sbjct: 282 TLINWLPTIFMTQGINLKDSIVLNTMSMFGTPFGIFIAMLVMDKIPRKTMGVGLLILIAV 341 Query: 117 LGVIYPMISDPFLLPAVGFALTVPIYVLVALLFGIYIPELFPTEVRLRASGIVNTLGRGA 176 LG IY + + L+ +GF L +Y+ V +Y+PE++PTE +LR SG+ N +GR + Sbjct: 342 LGYIYSLQTSMLLITLIGFFLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRIS 401 Query: 177 TIVTPFLVVMLFEARGVAGVMALM 200 I P+ V +L + GV GV L+ Sbjct: 402 GIAAPYAVAVLLSSYGVTGVFILL 425 >ECs2484 [GEPR] COG0477 Permeases of the major facilitator superfamily Ecs Escherichia coli O157:H7 Length = 459 Score = 114 bits (286), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 68/204 (33%), Positives = 109/204 (53%), Gaps = 4/204 (1%) Query: 1 MQAIEKEA--SQGQPLP--APAAATPAPVSPDLATLFAAPLLSRMIVGAVCLITINTLLY 56 M++IE+ G+PLP A AP + + L LL R+I+G+ LI +N + Y Sbjct: 222 MRSIEEGVIRHTGKPLPPVVIADDGKAPQAVPYSALLTGVLLKRVILGSCVLIAMNVVQY 281 Query: 57 GFVTWLPVFFIKQGLSVATSFGYSLLMALGAPIGSAIGALTADRWGRKPTIIGASLISII 116 + WLP F+ QG+++ S + + G P G I L D+ RK +G ++ + Sbjct: 282 TLINWLPTIFMTQGINLKDSIVLNTMSMFGTPFGIFIAMLVMDKIPRKTMGVGLLILIAV 341 Query: 117 LGVIYPMISDPFLLPAVGFALTVPIYVLVALLFGIYIPELFPTEVRLRASGIVNTLGRGA 176 LG IY + + L+ +GF L +Y+ V +Y+PE++PTE +LR SG+ N +GR + Sbjct: 342 LGYIYSLQTSMLLITLIGFFLITFVYMYVCYASAVYVPEIWPTEAKLRGSGLANAVGRIS 401 Query: 177 TIVTPFLVVMLFEARGVAGVMALM 200 I P+ V +L + GV GV L+ Sbjct: 402 GIAAPYAVAVLLSSYGVTGVFILL 425 >ydjE [GEPR] COG0477 Permeases of the major facilitator superfamily Eco Escherichia coli K12 Length = 452 Score = 108 bits (270), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 76/231 (32%), Positives = 118/231 (51%), Gaps = 8/231 (3%) Query: 2 QAIEKEASQGQPLPAPAAATPAPVSPDLAT---LFAAPLLSRMIVGAVCLITINTLLYGF 58 Q IE+E S P P + + + V T LF +L R +V LI +N LY Sbjct: 222 QQIEREKSIRLP-PLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTI 280 Query: 59 VTWLPVFFIKQGLSVATSFGYSLLMALGAPIGSAIGALTADRWGRKPTIIGASLISII-- 116 W+P F+ G+ V S + ++ +GAP+G I AL D + R+ + G++L+ II Sbjct: 281 TVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRR--LFGSTLLIIIAV 338 Query: 117 LGVIYPMISDPFLLPAVGFALTVPIYVLVALLFGIYIPELFPTEVRLRASGIVNTLGRGA 176 LG IY + + + + G + +Y+ V +YIPEL+PT +RLR SG VN +GR Sbjct: 339 LGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIV 398 Query: 177 TIVTPFLVVMLFEARGVAGVMALMIGLLVVQIITVWALGIEPRHRSLEELK 227 + TP+ V L G V ++ +L++ + + GIE R SLEE+ Sbjct: 399 AVFTPYGVAALLTHYGSITVFMVLGVMLLLCALVLSIFGIETRKVSLEEIS 449 >ZydjE [GEPR] COG0477 Permeases of the major facilitator superfamily EcZ Escherichia coli O157:H7 EDL933 Length = 416 Score = 108 bits (270), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 119/237 (50%), Gaps = 20/237 (8%) Query: 2 QAIEKEASQGQPLPAPAAATPAPVSPDLAT---LFAAPLLSRMIVGAVCLITINTLLYGF 58 Q IE+E S P P + + + V T LF +L R +V LI +N LY Sbjct: 186 QQIEREKSIRLP-PLTSYQSNSKVKVIKGTFWLLFKGEMLRRTLVAITVLIAMNISLYTI 244 Query: 59 VTWLPVFFIKQGLSVATSFGYSLLMALGAPIGSAIGALTADRWGRKPTIIGASLISII-- 116 W+P F+ G+ V S + ++ +GAP+G I AL D + R+ + G++L+ II Sbjct: 245 TVWIPTIFVNSGIDVDKSILMTAVIMIGAPVGIFIAALIIDHFPRR--LFGSTLLIIIAV 302 Query: 117 LGVIYPMISDPFLLPAVGFALTVPIYVLVALLFGIYIPELFPTEVRLRASGIVNTLGRGA 176 LG IY + + + + G + +Y+ V +YIPEL+PT +RLR SG VN +GR Sbjct: 303 LGYIYSIQTTEWAILIYGLVMIFFLYMYVCFASAVYIPELWPTHLRLRGSGFVNAVGRIV 362 Query: 177 TIVTPFLVVMLFEARG------VAGVMALMIGLLVVQIITVWALGIEPRHRSLEELK 227 + TP+ V L G V GVM L+ LV+ I GIE R SLEE+ Sbjct: 363 AVFTPYGVAALLTHYGSITVFMVLGVMLLLCA-LVLSI-----FGIETRKVSLEEIS 413