BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0248.0003.p (235 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC0206 [I] COG1788 Acyl CoA Ccr Caulobacter vibrioides 337 2e-92 RSc1570 [I] COG1788 Acyl CoA Rso Ralstonia solanacearum 331 8e-91 DRA0068 [I] COG1788 Acyl CoA Dra Deinococcus radiodurans 312 5e-85 CC2405 [I] COG1788 Acyl CoA Ccr Caulobacter vibrioides 310 2e-84 BS_yxjD [I] COG1788 Acyl CoA Bsu Bacillus subtilis 295 5e-80 >CC0206 [I] COG1788 Acyl CoA Ccr Caulobacter vibrioides Length = 236 Score = 337 bits (863), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 166/235 (70%), Positives = 188/235 (80%) Query: 1 MNKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGI 60 ++KV DA AL GLL DGM IM+GGFGLCGI E L AIRE+G K LTV+SNN GVDG Sbjct: 2 VDKVKKDAVEALAGLLFDGMTIMAGGFGLCGIPENLIAAIREAGTKDLTVISNNCGVDGF 61 Query: 61 GLSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120 GL LLE RQIKKM+SSYVGENKLF Q YL+GELELEFNPQGTLAERIRAGGAGIPAF+T Sbjct: 62 GLGILLENRQIKKMVSSYVGENKLFEQLYLSGELELEFNPQGTLAERIRAGGAGIPAFFT 121 Query: 121 KTGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMA 180 +TG GTL+AEGKE +EFDGE Y+MERGL AD++IV AWK D GNL+YRKTARNFNPMMA Sbjct: 122 RTGYGTLVAEGKETREFDGEMYVMERGLTADLSIVKAWKADAEGNLIYRKTARNFNPMMA 181 Query: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTRPRPAA 235 TA K TV EVE LV GE+D D IHTPGI+V R+++ +KRIE TR + A Sbjct: 182 TAGKKTVVEVEELVAIGELDKDAIHTPGIYVDRLIKGAKFEKRIERVTTRQKETA 236 >RSc1570 [I] COG1788 Acyl CoA Rso Ralstonia solanacearum Length = 232 Score = 331 bits (848), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 156/232 (67%), Positives = 186/232 (80%) Query: 1 MNKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGI 60 MNK+Y A AL G++KDG I GGFGLCGI E L A+R+SG KGLT +SNNAGVDG Sbjct: 1 MNKIYASAAEALAGIVKDGQTIAVGGFGLCGIPEALIGALRDSGAKGLTCISNNAGVDGF 60 Query: 61 GLSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120 GL RLLETRQIKKMISSYVGENK F +QYL+GELELEF PQGTLAE++RAGGAGIPAF+T Sbjct: 61 GLGRLLETRQIKKMISSYVGENKEFERQYLSGELELEFTPQGTLAEKLRAGGAGIPAFFT 120 Query: 121 KTGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMA 180 +TGVGT++A+GKEV+EFDGE+Y+MER L ADVA+V AWK D +GNL Y +TARNFNPM A Sbjct: 121 RTGVGTVVADGKEVREFDGEQYVMERSLIADVALVKAWKADKSGNLKYHRTARNFNPMCA 180 Query: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTRPR 232 A ++T+ EVE +V G DPD +HTPG+FV+RIV +KRIE R R + Sbjct: 181 MAGRITIVEVEEIVETGTFDPDEVHTPGVFVQRIVLNAHPEKRIEQRTVRAK 232 >DRA0068 [I] COG1788 Acyl CoA Dra Deinococcus radiodurans Length = 231 Score = 312 bits (799), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 162/230 (70%), Positives = 185/230 (80%) Query: 1 MNKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGI 60 MNK YP A AL ++ DG + GGFGLCGI E L A+R+SG K LT VSNNAGVDG Sbjct: 1 MNKEYPSAAEALRDIVHDGQTVAVGGFGLCGIPEQLIVALRDSGAKDLTAVSNNAGVDGW 60 Query: 61 GLSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120 GL LL+TRQI+KMISSYVGENK F +QYL+GELELEF PQGTLAER+RAGGAGIP FYT Sbjct: 61 GLGLLLQTRQIRKMISSYVGENKEFERQYLSGELELEFTPQGTLAERMRAGGAGIPGFYT 120 Query: 121 KTGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMA 180 KTGVGTL+AEGKE K+FDGE YI+ERG+ AD+A+V AWK D AGNLVYRKTARNFNP+ A Sbjct: 121 KTGVGTLVAEGKEHKDFDGETYILERGIRADLALVKAWKADRAGNLVYRKTARNFNPLAA 180 Query: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTR 230 T KVTVAEVE +V G++DPDHI TPGIFV+R+V T +KRIE R R Sbjct: 181 TCGKVTVAEVEEIVEVGDLDPDHIDTPGIFVQRVVVNATPEKRIEQRTVR 230 >CC2405 [I] COG1788 Acyl CoA Ccr Caulobacter vibrioides Length = 241 Score = 310 bits (793), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 152/231 (65%), Positives = 183/231 (79%) Query: 2 NKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGIG 61 +K+Y A +AL+G++ DGM +MSGGFGL G ETL A++++GVK LTV+SNN G DG G Sbjct: 3 SKIYESAAAALEGVVFDGMTLMSGGFGLSGNPETLIPALKDTGVKALTVISNNCGADGFG 62 Query: 62 LSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYTK 121 L LL QI+KM+SSYVGENKLF Q YL+GELELE NPQGTLAERIRAGGAGIPAFYTK Sbjct: 63 LWMLLNNGQIRKMVSSYVGENKLFEQLYLSGELELELNPQGTLAERIRAGGAGIPAFYTK 122 Query: 122 TGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMAT 181 TGVGT++AEGK V+ F+GE Y+ E L AD++IV AWK D GNLV+R TARNFNP+MAT Sbjct: 123 TGVGTVVAEGKPVETFEGEPYLRETWLRADLSIVKAWKADPEGNLVFRMTARNFNPVMAT 182 Query: 182 AAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTRPR 232 A KVT+ EVE +V AGE+D + IHTPGI+V RIV+ +KRIE TRPR Sbjct: 183 AGKVTIVEVEEIVEAGELDANAIHTPGIYVDRIVKSTINEKRIEKLTTRPR 233 >BS_yxjD [I] COG1788 Acyl CoA Bsu Bacillus subtilis Length = 238 Score = 295 bits (756), Expect = 5e-80, Method: Compositional matrix adjust. Identities = 146/230 (63%), Positives = 176/230 (76%), Gaps = 1/230 (0%) Query: 1 MNKVYPDAKSALDGLLKDGMMIMSGGFGLCGIAETLSDAIRESGVKGLTVVSNNAGVDGI 60 M KV +K A L+ DG +++GGFGLCGI E L +IR+ GVK LTVVSNN GVD Sbjct: 1 MGKVLSSSKEAAK-LIHDGDTLIAGGFGLCGIPEQLILSIRDQGVKDLTVVSNNCGVDDW 59 Query: 61 GLSRLLETRQIKKMISSYVGENKLFAQQYLAGELELEFNPQGTLAERIRAGGAGIPAFYT 120 GL LL +QIKKMI+SYVGENK+F +Q+L+GELE+E PQGTLAERIRAGGAGIP FYT Sbjct: 60 GLGLLLANKQIKKMIASYVGENKIFERQFLSGELEVELVPQGTLAERIRAGGAGIPGFYT 119 Query: 121 KTGVGTLIAEGKEVKEFDGEKYIMERGLFADVAIVHAWKGDTAGNLVYRKTARNFNPMMA 180 TGVGT IAEGKE K F G Y++ERG+ DVAIV AWK DT GNL++RKTARNFNP+ A Sbjct: 120 ATGVGTSIAEGKEHKTFGGRTYVLERGITGDVAIVKAWKADTMGNLIFRKTARNFNPIAA 179 Query: 181 TAAKVTVAEVEHLVPAGEIDPDHIHTPGIFVKRIVEVGTGKKRIEFRNTR 230 A K+T+AE E +V AGE+DPDHIHTPGI+V+ +V + +KRIE R + Sbjct: 180 MAGKITIAEAEEIVEAGELDPDHIHTPGIYVQHVVLGASQEKRIEKRTVQ 229