BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0059.p         (175 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc2717 [O] COG5387 Chaperone required for the assembly of the m...   168   7e-42
SMc01277 [O] COG5387 Chaperone required for the assembly of the ...   152   5e-37
BMEI0980 [O] COG5387 Chaperone required for the assembly of the ...   149   3e-36
CC1977 Non COG                                                         76   3e-14

>AGc2717 [O] COG5387 Chaperone required for the assembly of the
           mitochondrial F1-ATPase Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 264

 Score =  168 bits (425), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 87/176 (49%), Positives = 113/176 (64%), Gaps = 2/176 (1%)

Query: 1   MTMPLTRLANSVIEGVIDRVDEVADDAAKFLGSDLLFYRAGHPETLVAREARHWDPILFW 60
           + MP++R  N+ I+G+      V +D  +F  SDLL YRAG PE LVAR+  +WDP+L W
Sbjct: 89  VVMPVSRHVNTAIDGIASDTQAVFEDILRFSSSDLLCYRAGDPEALVARQTDYWDPVLDW 148

Query: 61  AADALGAHFVMAEGVMHIGQPEPAIKAARAAFPT--DPWSVAALHVVTTLTGSALLALAL 118
           A + LGA F++ EGVMH  QP  AI A          P ++AALH +T+LTGSA+LALAL
Sbjct: 149 ATNVLGARFILVEGVMHRDQPREAIAAFAVTLKKYDTPIALAALHTMTSLTGSAILALAL 208

Query: 119 AHGVRDEDQVWAAAHVDEDWNIEKWGVDEEVAARRAARQLDFKAAAGVLRELKPAA 174
           A G    ++ WA AH+DEDW  E+WG DEE   RRA R +D +AA  VL  LK A+
Sbjct: 209 AEGELTLEEAWALAHLDEDWTAEQWGEDEEALERRAVRLIDMRAALNVLESLKSAS 264


>SMc01277 [O] COG5387 Chaperone required for the assembly of the
           mitochondrial F1-ATPase Sme Sinorhizobium meliloti
          Length = 261

 Score =  152 bits (383), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 112/172 (65%), Gaps = 4/172 (2%)

Query: 3   MPLTRLANSVIEGVIDRVDEVADDAAKFLGSDLLFYRAGHPETLVAREARHWDPILFWAA 62
           MPLTR+ N+ I+GV      V DD  +F+GSDLL YRA  P+ LVAR+  HW+PI+ WAA
Sbjct: 91  MPLTRIVNTAIDGVALDDRAVFDDILRFVGSDLLCYRADSPKELVARQNVHWNPIIDWAA 150

Query: 63  DALGAHFVMAEGVMHIGQPEPAIKA---ARAAFPTDPWSVAALHVVTTLTGSALLALALA 119
             LGA F++ EGV+H  QP  A+ A       F T P  +A LH VT+LTGSALLALALA
Sbjct: 151 RTLGARFILVEGVIHQEQPAEAVSAFAEGLRGFAT-PLGLACLHTVTSLTGSALLALALA 209

Query: 120 HGVRDEDQVWAAAHVDEDWNIEKWGVDEEVAARRAARQLDFKAAAGVLRELK 171
            G    +Q WAAAHVDEDW IE+WG DEE   RR  R  +  AAA VL  LK
Sbjct: 210 MGRLSAEQAWAAAHVDEDWQIEQWGTDEEAFRRRENRWREMLAAAVVLDALK 261


>BMEI0980 [O] COG5387 Chaperone required for the assembly of the
           mitochondrial F1-ATPase Bme Brucella melitensis
          Length = 260

 Score =  149 bits (376), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 78/167 (46%), Positives = 107/167 (64%), Gaps = 3/167 (1%)

Query: 3   MPLTRLANSVIEGVIDRVDEVADDAAKFLGSDLLFYRAGHPETLVAREARHWDPILFWAA 62
           MP TRL N+ I+G+      V +D   F G+D+L YRA  P+ LV+R+  +WDP++ W  
Sbjct: 92  MPATRLVNTAIDGIAQDPQAVFEDILHFAGTDMLCYRADSPQELVSRQTENWDPLIDWM- 150

Query: 63  DALGAHFVMAEGVMHIGQPEPAIKA--ARAAFPTDPWSVAALHVVTTLTGSALLALALAH 120
           ++LGA F +AEGVMH+ QP  AI A     A   DP ++AALH +TTL GSA++ALA+A 
Sbjct: 151 ESLGARFALAEGVMHVEQPREAIAAFSVHMAGFKDPLALAALHTMTTLMGSAIIALAVAK 210

Query: 121 GVRDEDQVWAAAHVDEDWNIEKWGVDEEVAARRAARQLDFKAAAGVL 167
           G    ++ WA AH+DEDW IE WG D E   RR  R+++   AA +L
Sbjct: 211 GEISAEKGWAIAHIDEDWTIEHWGSDAEAIERRKNREIEMMVAARLL 257


>CC1977 Non COG
          Length = 241

 Score = 76.3 bits (186), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/145 (33%), Positives = 71/145 (48%), Gaps = 1/145 (0%)

Query: 3   MPLTRLANSVIEGVIDRVDEVADDAAKFLGSDLLFYRAGHPETLVAREARHWDPILFWAA 62
           MP TRLA + I+ + +   EVA +   +  SD L YRA  P  LV R+ R W  +L WA 
Sbjct: 71  MPATRLAFTAIDRIAETRAEVAREITAYAASDHLCYRAESPRVLVERQEREWGAVLDWAR 130

Query: 63  DALGAHFVMAEGVMHIGQPEPAIKAARAAFPT-DPWSVAALHVVTTLTGSALLALALAHG 121
              G  F    G++H  QP   + +  A   T D +++A +     L GS +L LA+  G
Sbjct: 131 AEHGLVFTPVAGIIHTPQPPETLASVEALVLTLDDFALAGVAFAAGLFGSTVLGLAVRAG 190

Query: 122 VRDEDQVWAAAHVDEDWNIEKWGVD 146
                Q    + +DE +  E+WG D
Sbjct: 191 QLAGQQALDLSRLDEIYQAEQWGED 215