BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0247.0045.p (444 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mlr0329 [L] COG2256 ATPase related to the helicase subunit of th... 698 0.0 BMEI0784 [L] COG2256 ATPase related to the helicase subunit of t... 694 0.0 SMc01279 [L] COG2256 ATPase related to the helicase subunit of t... 687 0.0 AGc3505 [L] COG2256 ATPase related to the helicase subunit of th... 684 0.0 CC1283 [L] COG2256 ATPase related to the helicase subunit of the... 533 e-151 >mlr0329 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Mlo Mesorhizobium loti Length = 435 Score = 698 bits (1801), Expect = 0.0, Method: Compositional matrix adjust. Identities = 339/432 (78%), Positives = 379/432 (87%), Gaps = 1/432 (0%) Query: 11 NLFAAAGMEQDAP-HPLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTLGSLVFWGPP 69 +LF+ E+ P PL DRLRP+ L +VVGQ+H+ GPDGALTR++ + +LGS++FWGPP Sbjct: 3 DLFSVDEPEKAPPGRPLADRLRPKNLGEVVGQEHLTGPDGALTRLIGSGSLGSMIFWGPP 62 Query: 70 GTGKTTVARLLADATELHFEQISAVFSGVADLKKAFDAARARRETGKGTLLFVDEVHRFN 129 GTGKTTVARLLA T L FEQISAVFSGVADLKK F+ A+ RR G+ TLLFVDE+HRFN Sbjct: 63 GTGKTTVARLLAGETSLAFEQISAVFSGVADLKKVFETAKLRRANGRQTLLFVDEIHRFN 122 Query: 130 RAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDTAAIEKLFANAEK 189 RAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARV+VFHSL +I KL AE+ Sbjct: 123 RAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVMVFHSLGEESIAKLMVRAEE 182 Query: 190 IEGKQLPLDAEARAVLVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQAILQRRAPIY 249 EG+ LPLD EARA+L+RM+DGDGRASLTLAEEVWRAA+ GEVF+ E LQ I+QRRAPIY Sbjct: 183 TEGRALPLDDEARAMLIRMSDGDGRASLTLAEEVWRAAKPGEVFDPEGLQRIVQRRAPIY 242 Query: 250 DKSADGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMAVEDIGLADP 309 DK DGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPL+L RR+VRMA+EDIGLADP Sbjct: 243 DKGQDGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAMEDIGLADP 302 Query: 310 QALAVCNAAKEAYDFLGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQTAKQGGSLLP 369 QAL V NAAK+AYD+LGSPEGELA A+A VYLATAPKSNAVYTAF AA Q AKQ GSLLP Sbjct: 303 QALVVANAAKDAYDYLGSPEGELAFAEATVYLATAPKSNAVYTAFKAATQAAKQHGSLLP 362 Query: 370 PKHILNSPTKLMKSEGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPDRGFEREIRK 429 PKHILN+PTKLMK E YG+GY+YDHD PDAFSGQDYFPE +GRQTFYDPP+RGFER+IRK Sbjct: 363 PKHILNAPTKLMKEEDYGAGYRYDHDEPDAFSGQDYFPEKMGRQTFYDPPERGFERDIRK 422 Query: 430 RLDYWARLRKER 441 RLDYWA+LRKER Sbjct: 423 RLDYWAKLRKER 434 >BMEI0784 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Bme Brucella melitensis Length = 457 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 331/432 (76%), Positives = 381/432 (88%), Gaps = 1/432 (0%) Query: 11 NLFA-AAGMEQDAPHPLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTLGSLVFWGPP 69 +LF+ AA D PL DRLRP+ L++V GQ+H+ GP+G LTRM+ + +LGS+VFWGPP Sbjct: 23 DLFSTAADPNADRNRPLADRLRPKHLSEVTGQEHLTGPEGVLTRMIASGSLGSMVFWGPP 82 Query: 70 GTGKTTVARLLADATELHFEQISAVFSGVADLKKAFDAARARRETGKGTLLFVDEVHRFN 129 GTGKTTVARLLA T+L FEQISA+FSGVADLK+ F+AARARR +G+ TLLFVDE+HRFN Sbjct: 83 GTGKTTVARLLAGETDLAFEQISAIFSGVADLKRVFEAARARRMSGRQTLLFVDEIHRFN 142 Query: 130 RAQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDTAAIEKLFANAEK 189 RAQQDSFLPVMEDGTV+L+GATTENPSFELNAALLSRARVL FH D+ +I L AE+ Sbjct: 143 RAQQDSFLPVMEDGTVILIGATTENPSFELNAALLSRARVLTFHPHDSESIATLLKRAEE 202 Query: 190 IEGKQLPLDAEARAVLVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQAILQRRAPIY 249 EG+ LPLD EARA L+RMADGDGRA+LTLAEEVWRA R GEVF+A +LQ ++QRRAPIY Sbjct: 203 QEGQALPLDDEARASLIRMADGDGRAALTLAEEVWRAVRPGEVFDAAKLQDVVQRRAPIY 262 Query: 250 DKSADGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMAVEDIGLADP 309 DKS DGHYNLISALHKSVRGSDPDAALYYL+RMFDAGEDPL++ RR+VRM+VEDIGLADP Sbjct: 263 DKSQDGHYNLISALHKSVRGSDPDAALYYLSRMFDAGEDPLYIGRRLVRMSVEDIGLADP 322 Query: 310 QALAVCNAAKEAYDFLGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQTAKQGGSLLP 369 QALA+CNAAK+AYD+LGSPEGELA+AQA VYLATAPKSNAVY AF +M+ AK+ GSLLP Sbjct: 323 QALAICNAAKDAYDYLGSPEGELALAQACVYLATAPKSNAVYVAFKNSMRAAKENGSLLP 382 Query: 370 PKHILNSPTKLMKSEGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPDRGFEREIRK 429 PKHILN+PTKLMK+EGY GY YDHD PDAFSGQDYFPEA+GRQ FY+PP+RGFEREIRK Sbjct: 383 PKHILNAPTKLMKNEGYSEGYAYDHDQPDAFSGQDYFPEAMGRQVFYNPPERGFEREIRK 442 Query: 430 RLDYWARLRKER 441 RL+YWARLR+ER Sbjct: 443 RLEYWARLRQER 454 >SMc01279 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Sme Sinorhizobium meliloti Length = 436 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/417 (77%), Positives = 372/417 (89%) Query: 25 PLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTLGSLVFWGPPGTGKTTVARLLADAT 84 PL DRLRPRTLA+V GQ+H+ GPDG LTRM+ + +LGS++FWGPPGTGKTTVARLL+ Sbjct: 18 PLADRLRPRTLAEVTGQEHLTGPDGVLTRMIASGSLGSMIFWGPPGTGKTTVARLLSGEA 77 Query: 85 ELHFEQISAVFSGVADLKKAFDAARARRETGKGTLLFVDEVHRFNRAQQDSFLPVMEDGT 144 L FEQISA+FSGVADLKK F++ARARR +G+ TLLFVDE+HRFNRAQQDSFLPVMEDGT Sbjct: 78 GLAFEQISAIFSGVADLKKVFESARARRMSGRQTLLFVDEIHRFNRAQQDSFLPVMEDGT 137 Query: 145 VVLVGATTENPSFELNAALLSRARVLVFHSLDTAAIEKLFANAEKIEGKQLPLDAEARAV 204 V+LVGATTENPSFELNAALLSRARVL F D A++E+L AE EGK LPLD EARA Sbjct: 138 VILVGATTENPSFELNAALLSRARVLTFKPHDEASLEELLKRAEAAEGKPLPLDDEARAS 197 Query: 205 LVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQAILQRRAPIYDKSADGHYNLISALH 264 L+RMADGDGRA LTLAEEVWRAAR+ E+F++ LQ I+QRRAP+YDK DGHYNLISALH Sbjct: 198 LIRMADGDGRAVLTLAEEVWRAARREEIFDSAGLQEIVQRRAPVYDKGQDGHYNLISALH 257 Query: 265 KSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMAVEDIGLADPQALAVCNAAKEAYDF 324 KSVRGSDPDAALYYL RMFDAGEDPL++ RR+VRMAVEDIGLADPQALA+CNAAK+AYD+ Sbjct: 258 KSVRGSDPDAALYYLCRMFDAGEDPLYIGRRLVRMAVEDIGLADPQALAICNAAKDAYDY 317 Query: 325 LGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQTAKQGGSLLPPKHILNSPTKLMKSE 384 LGSPEGELA+A+A VYLATAPKSNAVYTA+ AAM+ AK+ GSLLPPKHILN+PTKLMK E Sbjct: 318 LGSPEGELALAEACVYLATAPKSNAVYTAYKAAMRAAKENGSLLPPKHILNAPTKLMKGE 377 Query: 385 GYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPDRGFEREIRKRLDYWARLRKER 441 GYG GY+YDHD PDAFSGQDYFPE +GR+TFYDPP+RGFEREIRKRL++W +LR++R Sbjct: 378 GYGDGYRYDHDEPDAFSGQDYFPEKMGRKTFYDPPERGFEREIRKRLEWWNKLRRDR 434 >AGc3505 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 438 Score = 684 bits (1766), Expect = 0.0, Method: Compositional matrix adjust. Identities = 328/418 (78%), Positives = 368/418 (88%) Query: 25 PLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTLGSLVFWGPPGTGKTTVARLLADAT 84 PL DRLRP+TL++V GQ H+ G +G L RM+++ +LGS++FWGPPGTGKTTVARLL+ Sbjct: 19 PLADRLRPKTLSEVSGQPHLTGEEGVLRRMIDSGSLGSMIFWGPPGTGKTTVARLLSGEA 78 Query: 85 ELHFEQISAVFSGVADLKKAFDAARARRETGKGTLLFVDEVHRFNRAQQDSFLPVMEDGT 144 L FEQISA+FSGVADLKK F+AAR RR G+ TLLFVDE+HRFNRAQQDSFLPVMEDGT Sbjct: 79 GLAFEQISAIFSGVADLKKVFEAARTRRMNGRQTLLFVDEIHRFNRAQQDSFLPVMEDGT 138 Query: 145 VVLVGATTENPSFELNAALLSRARVLVFHSLDTAAIEKLFANAEKIEGKQLPLDAEARAV 204 ++LVGATTENPSFELNAALLSRARVL F S D ++ +L AE+ EGK LPL EARA Sbjct: 139 IILVGATTENPSFELNAALLSRARVLTFGSHDEDSLSELLKRAEEAEGKPLPLTEEARAS 198 Query: 205 LVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQAILQRRAPIYDKSADGHYNLISALH 264 L+RMADGDGRA LTLAEEVWRAARK E F+ E L I+QRRAP+YDKS DGHYNLISALH Sbjct: 199 LLRMADGDGRAVLTLAEEVWRAARKDETFDTEGLTRIVQRRAPVYDKSQDGHYNLISALH 258 Query: 265 KSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMAVEDIGLADPQALAVCNAAKEAYDF 324 KSVRGSDPDAALYYLARMFDAGEDPL+L RR+VRMAVEDIGLADPQALAVCNAAK+AYD+ Sbjct: 259 KSVRGSDPDAALYYLARMFDAGEDPLYLGRRLVRMAVEDIGLADPQALAVCNAAKDAYDY 318 Query: 325 LGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQTAKQGGSLLPPKHILNSPTKLMKSE 384 LGSPEGELA+AQA VYLATAPKSNAVYTAF AAM+ AK+ GSL+PPKHILN+PTKLMK E Sbjct: 319 LGSPEGELALAQACVYLATAPKSNAVYTAFKAAMRAAKENGSLVPPKHILNAPTKLMKGE 378 Query: 385 GYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPDRGFEREIRKRLDYWARLRKERG 442 GYG GY+YDHD PDAFSGQDYFPE +GR TFYDPPDRGFEREIRKRLD+WA+LR+ERG Sbjct: 379 GYGDGYRYDHDEPDAFSGQDYFPEKMGRTTFYDPPDRGFEREIRKRLDWWAKLRRERG 436 >CC1283 [L] COG2256 ATPase related to the helicase subunit of the Holliday junction resolvase Ccr Caulobacter vibrioides Length = 433 Score = 533 bits (1372), Expect = e-151, Method: Compositional matrix adjust. Identities = 274/430 (63%), Positives = 330/430 (76%), Gaps = 1/430 (0%) Query: 11 NLFAAAGMEQDAPHPLPDRLRPRTLADVVGQDHILGPDGALTRMLETRTLGSLVFWGPPG 70 +LF AAG+ AP PL DRLRP++L +VVGQ H+LGP+G + RM R L S++ WGPPG Sbjct: 3 DLFQAAGLTPHAPSPLADRLRPQSLDEVVGQQHLLGPEGPIGRMAAARRLASMILWGPPG 62 Query: 71 TGKTTVARLLADATELHFEQISAVFSGVADLKKAFDAARARRETGKGTLLFVDEVHRFNR 130 TGKTT+ARLLA A F QISAVFSGVADLKKAF+ ARARR G+ TLLFVDE+HRFNR Sbjct: 63 TGKTTIARLLAKAGGYEFMQISAVFSGVADLKKAFEQARARRMAGQSTLLFVDEIHRFNR 122 Query: 131 AQQDSFLPVMEDGTVVLVGATTENPSFELNAALLSRARVLVFHSLDTAAIEKLFANAEKI 190 AQQD FLP +E+G V LVGATTENPSFELN ALLSR +V V L ++E L AE Sbjct: 123 AQQDGFLPFVEEGIVTLVGATTENPSFELNGALLSRCQVFVLKRLTEESLELLLQRAEAA 182 Query: 191 EGKQLPLDAEARAVLVRMADGDGRASLTLAEEVWRAARKGEVFNAEQLQAILQRRAPIYD 250 E + LP+DAEAR+ LV MADGDGR LTLAE ++ + N QL LQ+R P YD Sbjct: 183 ENRPLPIDAEARSALVAMADGDGRYLLTLAETLFSIGTDTPL-NPTQLGQFLQKRRPAYD 241 Query: 251 KSADGHYNLISALHKSVRGSDPDAALYYLARMFDAGEDPLFLARRVVRMAVEDIGLADPQ 310 K + HYNLISALHKSVRGSDPDAALY+LARM + GEDPLF+ARR+VRMA EDIG ADP Sbjct: 242 KDREEHYNLISALHKSVRGSDPDAALYWLARMLEGGEDPLFIARRLVRMASEDIGAADPL 301 Query: 311 ALAVCNAAKEAYDFLGSPEGELAIAQAVVYLATAPKSNAVYTAFGAAMQTAKQGGSLLPP 370 +L + AAK+AYDFLGSPEGELA+AQAVV++A+APKSNAVYTA+ AA + AK+ GSL+PP Sbjct: 302 SLLLTTAAKDAYDFLGSPEGELALAQAVVHMASAPKSNAVYTAYKAARRAAKETGSLMPP 361 Query: 371 KHILNSPTKLMKSEGYGSGYQYDHDMPDAFSGQDYFPEALGRQTFYDPPDRGFEREIRKR 430 HILN+PTKLMKS GYG GY YDHD+ SGQ+YFP+ + R+ FY+P G E ++R+R Sbjct: 362 SHILNAPTKLMKSLGYGDGYAYDHDVEGGVSGQNYFPDGMERRRFYEPKPVGAEAKVRER 421 Query: 431 LDYWARLRKE 440 L+ W ++RK+ Sbjct: 422 LEAWGKVRKD 431