BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0033.p         (192 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr0325 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/4...   271   6e-73
AGc3518 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/4...   265   4e-71
BMEI0781 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/...   262   3e-70
SMc01285 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/...   258   4e-69
CC1272 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/40...   251   5e-67

>mlr0325 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD
           subunit Mlo Mesorhizobium loti
          Length = 336

 Score =  271 bits (693), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 132/168 (78%), Positives = 149/168 (88%), Gaps = 2/168 (1%)

Query: 7   IQKNWQELIRPNKLQVTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQGAAVQS 66
           IQKNWQELI+PNK++ +  S      T+VAEPLERGFG TLGNALRR+LLSSL+GAAV +
Sbjct: 2   IQKNWQELIKPNKIEFS--SKKKTLTTLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTA 59

Query: 67  VHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTAGDIQTV 126
           V IDGVLHEFSSIAGVREDVTDIVLNIK+I+I+M+G+GPKRMVV+KQGPGAV AGDIQTV
Sbjct: 60  VQIDGVLHEFSSIAGVREDVTDIVLNIKEIAIRMEGDGPKRMVVRKQGPGAVLAGDIQTV 119

Query: 127 GDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174
           GDV +LNPD  +CTLD+GAEIRMEFTV TGKGYV AERNR EDAPIGL
Sbjct: 120 GDVEILNPDHVICTLDEGAEIRMEFTVDTGKGYVPAERNRAEDAPIGL 167


>AGc3518 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD
           subunit Atu Agrobacterium tumefaciens strain C58
           (Cereon)
          Length = 336

 Score =  265 bits (678), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/168 (77%), Positives = 146/168 (86%), Gaps = 2/168 (1%)

Query: 7   IQKNWQELIRPNKLQVTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQGAAVQS 66
           IQKNWQELI+PNK++ T  S     AT+VAEPLERGFG TLGNALRR+LLSSL+GAAV +
Sbjct: 2   IQKNWQELIKPNKVEFTSSSRTK--ATLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTA 59

Query: 67  VHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTAGDIQTV 126
           V IDGVLHEFSSI GVREDVTDIVLNIK+I+IKM G+  KRMVV+KQGPG+VTAGDIQTV
Sbjct: 60  VQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDSKRMVVRKQGPGSVTAGDIQTV 119

Query: 127 GDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174
           GD+ +LNPD  +CTLD+GAEIRMEFTV  GKGYV AERNR EDAPIGL
Sbjct: 120 GDIEILNPDHVICTLDEGAEIRMEFTVNNGKGYVPAERNRAEDAPIGL 167


>BMEI0781 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD
           subunit Bme Brucella melitensis
          Length = 337

 Score =  262 bits (670), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 132/169 (78%), Positives = 148/169 (87%), Gaps = 3/169 (1%)

Query: 7   IQKNWQELIRPNKLQ-VTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQGAAVQ 65
           IQKNWQELI+PNK+  +T GS     ATVVAEPLERGFG TLGNALRR+LLSSL+GAAV 
Sbjct: 2   IQKNWQELIKPNKVDFITHGSRTH--ATVVAEPLERGFGLTLGNALRRVLLSSLRGAAVT 59

Query: 66  SVHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTAGDIQT 125
           +V IDGVLHEFSSI GVREDVTDIVLNIK+I+I+M+GEGPKRMVV K+GPG VTAGDIQT
Sbjct: 60  AVQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIRMEGEGPKRMVVHKEGPGVVTAGDIQT 119

Query: 126 VGDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174
           VGDV +LNP+  +CTLD+GAEIRMEFTV TGKGYV A+ NR EDAPIGL
Sbjct: 120 VGDVEILNPEHVICTLDEGAEIRMEFTVNTGKGYVPADCNRAEDAPIGL 168


>SMc01285 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD
           subunit Sme Sinorhizobium meliloti
          Length = 336

 Score =  258 bits (660), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 127/168 (75%), Positives = 144/168 (85%), Gaps = 2/168 (1%)

Query: 7   IQKNWQELIRPNKLQVTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQGAAVQS 66
           IQKNWQELI+PNK++    S     AT+VAEPLERGFG TLGNALRR+LLSSL+GAAV +
Sbjct: 2   IQKNWQELIKPNKVEF--ASSGRTKATLVAEPLERGFGLTLGNALRRVLLSSLRGAAVTA 59

Query: 67  VHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTAGDIQTV 126
           V IDGVLHEFSSI GVREDVTDIVLNIK+I+IKM G+  KRMVV+KQGPG VTAGDIQTV
Sbjct: 60  VQIDGVLHEFSSIPGVREDVTDIVLNIKEIAIKMDGDDAKRMVVRKQGPGVVTAGDIQTV 119

Query: 127 GDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174
           GD+ +LNP+  +CTLD+GAEIRMEFTV  GKGYV A+RNR EDAPIGL
Sbjct: 120 GDIEILNPNHVICTLDEGAEIRMEFTVNNGKGYVPADRNRSEDAPIGL 167


>CC1272 [K] COG0202 DNA-directed RNA polymerase, alpha subunit/40 kD
           subunit Ccr Caulobacter vibrioides
          Length = 338

 Score =  251 bits (642), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 117/168 (69%), Positives = 139/168 (82%)

Query: 7   IQKNWQELIRPNKLQVTPGSDASRFATVVAEPLERGFGQTLGNALRRILLSSLQGAAVQS 66
           I++NW ELIRP K Q+  G+DA+R A +VAEPLERGFG TLGNALRR+LLSSLQGAAV +
Sbjct: 2   IERNWNELIRPEKPQIETGADATRKARIVAEPLERGFGVTLGNALRRVLLSSLQGAAVTA 61

Query: 67  VHIDGVLHEFSSIAGVREDVTDIVLNIKDISIKMQGEGPKRMVVKKQGPGAVTAGDIQTV 126
           + IDGV+HEFSS+ GVREDV DIVLNIK ++++M  EGPKRM ++  GPG VTAG I+T 
Sbjct: 62  IQIDGVVHEFSSLEGVREDVVDIVLNIKQLAVRMHAEGPKRMTLRATGPGPVTAGQIETP 121

Query: 127 GDVTVLNPDLQLCTLDDGAEIRMEFTVTTGKGYVAAERNRPEDAPIGL 174
            D+ +LNPD  LCTLDDGA +RMEFTV  GKGYV A+RNRPEDAPIGL
Sbjct: 122 ADIEILNPDHVLCTLDDGASVRMEFTVNNGKGYVPADRNRPEDAPIGL 169