BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0031.p         (122 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr0323 [J] COG0099 Ribosomal protein S13 Mlo Mesorhizobium loti      211   3e-55
AGc3520 [J] COG0099 Ribosomal protein S13 Atu Agrobacterium tume...   207   5e-54
SMc01287 [J] COG0099 Ribosomal protein S13 Sme Sinorhizobium mel...   207   6e-54
CC1270 [J] COG0099 Ribosomal protein S13 Ccr Caulobacter vibrioides   204   5e-53
BMEI0779 [J] COG0099 Ribosomal protein S13 Bme Brucella melitensis    202   2e-52

>mlr0323 [J] COG0099 Ribosomal protein S13 Mlo Mesorhizobium loti
          Length = 122

 Score =  211 bits (537), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 104/122 (85%), Positives = 113/122 (92%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           +ARIAGVNIPTNKRV+IALQYIHGIG+K A +I++KV IP +RRVNQLTD EVLQIRE I
Sbjct: 1   MARIAGVNIPTNKRVVIALQYIHGIGKKFAQEIVDKVGIPAERRVNQLTDAEVLQIRETI 60

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           DRDY VEGDLRREV +NIKRLMDLGCYRGLRHRR LPVRGQRTHTNARTRKGPAK+IAGK
Sbjct: 61  DRDYQVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRGQRTHTNARTRKGPAKSIAGK 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122


>AGc3520 [J] COG0099 Ribosomal protein S13 Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 155

 Score =  207 bits (527), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 103/122 (84%), Positives = 110/122 (90%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           VARIAGVNIPT KRV+IAL YIHGIG K A +IM+KV IP ++RV+QLTD EVLQIRE I
Sbjct: 34  VARIAGVNIPTAKRVVIALTYIHGIGPKFAQEIMDKVGIPAEKRVHQLTDAEVLQIREAI 93

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           DRDY VEGDLRRE  +NIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK
Sbjct: 94  DRDYQVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 153

Query: 121 KK 122
           KK
Sbjct: 154 KK 155


>SMc01287 [J] COG0099 Ribosomal protein S13 Sme Sinorhizobium meliloti
          Length = 122

 Score =  207 bits (526), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 103/122 (84%), Positives = 110/122 (90%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           +ARIAGVNIPT KRV+IAL YIHGIG K A +I+EKV IP +RRV+QLTD EVLQIRE I
Sbjct: 1   MARIAGVNIPTAKRVVIALTYIHGIGTKFAQEIIEKVGIPAERRVHQLTDAEVLQIRETI 60

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           DRDY VEGDLRRE  +NIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK
Sbjct: 61  DRDYQVEGDLRRETSMNIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122


>CC1270 [J] COG0099 Ribosomal protein S13 Ccr Caulobacter vibrioides
          Length = 122

 Score =  204 bits (518), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 103/122 (84%), Positives = 109/122 (89%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           +ARIAGVNIPTNKRVLIALQYIHGIGQK+A +I+ KV I   RRVNQLTD EVLQIRE I
Sbjct: 1   MARIAGVNIPTNKRVLIALQYIHGIGQKSAREIITKVGIEDARRVNQLTDAEVLQIRETI 60

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           DRDY VEGDLRRE  +NIKRLMDL CYRGLRHR+GLPVRGQRTHTNARTRKGPAK IAGK
Sbjct: 61  DRDYTVEGDLRRENSMNIKRLMDLACYRGLRHRKGLPVRGQRTHTNARTRKGPAKPIAGK 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122


>BMEI0779 [J] COG0099 Ribosomal protein S13 Bme Brucella melitensis
          Length = 122

 Score =  202 bits (513), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 103/122 (84%), Positives = 108/122 (88%)

Query: 1   VARIAGVNIPTNKRVLIALQYIHGIGQKNAADIMEKVKIPVDRRVNQLTDQEVLQIREVI 60
           +ARIAGVNIPTNKRV IALQYIHGIG K A +I+ KV I  DRRVNQL+D EVLQIRE I
Sbjct: 1   MARIAGVNIPTNKRVNIALQYIHGIGPKFAREIVTKVGIADDRRVNQLSDAEVLQIREAI 60

Query: 61  DRDYLVEGDLRREVGINIKRLMDLGCYRGLRHRRGLPVRGQRTHTNARTRKGPAKAIAGK 120
           D DY VEGDLRREV +NIKRLMDLGCYRGLRHRR LPVRGQRTHTNARTRKGPAKAIAGK
Sbjct: 61  DADYQVEGDLRREVSMNIKRLMDLGCYRGLRHRRSLPVRGQRTHTNARTRKGPAKAIAGK 120

Query: 121 KK 122
           KK
Sbjct: 121 KK 122