BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0027.p         (63 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

msr0316 [J] COG1841 Ribosomal protein L30/L7E Mlo Mesorhizobium ...    79   3e-15
CC1266 [J] COG1841 Ribosomal protein L30/L7E Ccr Caulobacter vib...    78   5e-15
SMc01291 [J] COG1841 Ribosomal protein L30/L7E Sme Sinorhizobium...    77   9e-15
BMEI0775 [J] COG1841 Ribosomal protein L30/L7E Bme Brucella meli...    77   1e-14
YPO0227 [J] COG1841 Ribosomal protein L30/L7E Ype Yersinia pestis      57   7e-09

>msr0316 [J] COG1841 Ribosomal protein L30/L7E Mlo Mesorhizobium loti
          Length = 65

 Score = 78.6 bits (192), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 40/61 (65%), Positives = 47/61 (77%)

Query: 3  KASKTIKVEQTGSAIRRHHSQRSTLIGLKLNKIGRVAELQDTPEVRGMISKVQHLVRVVG 62
          KA+KTI VEQ GS IRR   QR+TL+GL LNK+ +   L+DTP VRGMI+ VQHLVRVV 
Sbjct: 4  KATKTITVEQIGSPIRRPKEQRATLVGLGLNKMHKQRTLEDTPSVRGMIAAVQHLVRVVD 63

Query: 63 E 63
          E
Sbjct: 64 E 64


>CC1266 [J] COG1841 Ribosomal protein L30/L7E Ccr Caulobacter vibrioides
          Length = 61

 Score = 78.2 bits (191), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 47/61 (77%), Gaps = 1/61 (1%)

Query: 1  MAKASKTIKVEQTGSAIRRHHSQRSTLIGLKLNKIGRVAELQDTPEVRGMISKVQHLVRV 60
          MA+A KT+ V QTGS IRR   QR+TL+GL LN++GRV+ LQD P  RGMI KVQHL+ +
Sbjct: 1  MAEA-KTVTVRQTGSPIRREKDQRATLVGLGLNRVGRVSTLQDNPSTRGMIRKVQHLLEI 59

Query: 61 V 61
          V
Sbjct: 60 V 60


>SMc01291 [J] COG1841 Ribosomal protein L30/L7E Sme Sinorhizobium meliloti
          Length = 67

 Score = 77.0 bits (188), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 43/66 (65%), Positives = 47/66 (71%), Gaps = 3/66 (4%)

Query: 1  MAK---ASKTIKVEQTGSAIRRHHSQRSTLIGLKLNKIGRVAELQDTPEVRGMISKVQHL 57
          MAK   A KT+ VEQ GS IRR   QR TL+GL LNK+ RV  L+DTP VRGMI  VQHL
Sbjct: 1  MAKKEVAKKTVTVEQIGSPIRRPAVQRQTLVGLGLNKMHRVRTLEDTPAVRGMIRAVQHL 60

Query: 58 VRVVGE 63
          VRVV E
Sbjct: 61 VRVVDE 66


>BMEI0775 [J] COG1841 Ribosomal protein L30/L7E Bme Brucella melitensis
          Length = 65

 Score = 76.6 bits (187), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 46/61 (75%)

Query: 3  KASKTIKVEQTGSAIRRHHSQRSTLIGLKLNKIGRVAELQDTPEVRGMISKVQHLVRVVG 62
          K  KT+ VEQ GS IRR   QR+TLIGL LNK+ R + L+DTP VRGMI+K+ HLVRVV 
Sbjct: 4  KKGKTVTVEQIGSPIRRPAEQRATLIGLGLNKMHRRSTLEDTPAVRGMIAKLPHLVRVVD 63

Query: 63 E 63
          E
Sbjct: 64 E 64


>YPO0227 [J] COG1841 Ribosomal protein L30/L7E Ype Yersinia pestis
          Length = 59

 Score = 57.4 bits (137), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 29/56 (51%), Positives = 40/56 (71%)

Query: 5  SKTIKVEQTGSAIRRHHSQRSTLIGLKLNKIGRVAELQDTPEVRGMISKVQHLVRV 60
          +KTIKV QT S+I R    ++TLIGL L +IG   E +DTP VRGM++ V ++V+V
Sbjct: 2  AKTIKVTQTKSSIGRLPKHKATLIGLGLRRIGHTVEREDTPAVRGMVNLVSYMVKV 57