BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0024.p         (177 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr0312 [J] COG0097 Ribosomal protein L6P/L9E Mlo Mesorhizobium ...   254   9e-68
BMEI0772 [J] COG0097 Ribosomal protein L6P/L9E Bme Brucella meli...   251   5e-67
SMc01294 [J] COG0097 Ribosomal protein L6P/L9E Sme Sinorhizobium...   241   7e-64
CC1263 [J] COG0097 Ribosomal protein L6P/L9E Ccr Caulobacter vib...   226   2e-59
AGc3532 [J] COG0097 Ribosomal protein L6P/L9E Atu Agrobacterium ...   211   6e-55

>mlr0312 [J] COG0097 Ribosomal protein L6P/L9E Mlo Mesorhizobium loti
          Length = 177

 Score =  254 bits (648), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 124/177 (70%), Positives = 147/177 (83%)

Query: 1   MSRIGKRPVAIPSGVTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNR 60
           MSRIGK+PV++P GVTATV GQTV  KGPKG+L+FVV+D+V VK E  ++ V PR +T  
Sbjct: 1   MSRIGKKPVSLPQGVTATVNGQTVTAKGPKGELKFVVNDEVLVKMEGSEIAVQPRDQTKT 60

Query: 61  AQAMYGTARAQVANLVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEG 120
           A++ +G +R Q+ N++ GV  GFE+KLEITGVGYRAAMQGKNLQLALG+SHDVVY  P G
Sbjct: 61  ARSKWGMSRTQIVNILHGVKDGFEKKLEITGVGYRAAMQGKNLQLALGFSHDVVYETPAG 120

Query: 121 ITIAVPKPTEITITGNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177
           +TIAVPKPTEIT+TG D Q+VGQVAAEIR YR PEPYKGKGV+YA E I RKEGKKK
Sbjct: 121 VTIAVPKPTEITVTGIDKQQVGQVAAEIREYRGPEPYKGKGVRYAGEKIVRKEGKKK 177


>BMEI0772 [J] COG0097 Ribosomal protein L6P/L9E Bme Brucella melitensis
          Length = 177

 Score =  251 bits (641), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 122/177 (68%), Positives = 148/177 (83%)

Query: 1   MSRIGKRPVAIPSGVTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNR 60
           MSRIGK+PV +P+GVTA+VEGQTVK KG KG+L FVVHD+V VK E+G V+V PR ++  
Sbjct: 1   MSRIGKKPVPVPAGVTASVEGQTVKAKGAKGELSFVVHDEVLVKMEDGAVRVDPRDQSRE 60

Query: 61  AQAMYGTARAQVANLVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEG 120
           A++ +G +R  ++N+  GV  GFE+KLEI+GVGYRAAMQGKNLQL+LG+SH+VVY +P G
Sbjct: 61  ARSKWGMSRTMISNIFVGVKDGFEKKLEISGVGYRAAMQGKNLQLSLGFSHEVVYDVPAG 120

Query: 121 ITIAVPKPTEITITGNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177
           IT+AVPKPTEI +TG D Q+VGQVAAEIR YR PEPYKGKGVKYA E I RKEGKKK
Sbjct: 121 ITVAVPKPTEIVVTGIDKQQVGQVAAEIREYRGPEPYKGKGVKYAGEKIVRKEGKKK 177


>SMc01294 [J] COG0097 Ribosomal protein L6P/L9E Sme Sinorhizobium meliloti
          Length = 177

 Score =  241 bits (614), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 119/177 (67%), Positives = 142/177 (80%)

Query: 1   MSRIGKRPVAIPSGVTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNR 60
           MSRIGK+PV +P+GVTA V+GQ V  KGPKG+L FV +D+V VK EN  V V P  ++  
Sbjct: 1   MSRIGKKPVQVPAGVTANVDGQKVTAKGPKGELFFVANDEVSVKLENNTVVVQPLNESKD 60

Query: 61  AQAMYGTARAQVANLVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEG 120
           A+A +G +R  + N+++GV  G+ERKLEI GVGYRA+MQGKNLQLALG+SHDVVY  PEG
Sbjct: 61  ARAKWGMSRTMIENILKGVKDGYERKLEINGVGYRASMQGKNLQLALGFSHDVVYQTPEG 120

Query: 121 ITIAVPKPTEITITGNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177
           ITIAVPKPTEI ++G + Q+VGQVAAEIR YR PEPYKGKGVKYA E I RKEGKKK
Sbjct: 121 ITIAVPKPTEIVVSGINKQQVGQVAAEIREYRGPEPYKGKGVKYAEERIVRKEGKKK 177


>CC1263 [J] COG0097 Ribosomal protein L6P/L9E Ccr Caulobacter vibrioides
          Length = 177

 Score =  226 bits (575), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 113/177 (63%), Positives = 134/177 (75%)

Query: 1   MSRIGKRPVAIPSGVTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNR 60
           MSRIGK+ VAIPSGV  T+ GQTV VKGPKGQL + + D+VEVK E  ++ +APRV T R
Sbjct: 1   MSRIGKKAVAIPSGVQVTLAGQTVTVKGPKGQLSWTIADEVEVKQEGAELLLAPRVDTKR 60

Query: 61  AQAMYGTARAQVANLVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEG 120
           A+ M+G +R  VAN+V GVT GFE  LE+ GVGYRAAM+G  L L LG+SHDV  A P G
Sbjct: 61  AKGMWGLSRTLVANMVHGVTVGFEESLELVGVGYRAAMKGTALSLQLGFSHDVDVAAPAG 120

Query: 121 ITIAVPKPTEITITGNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177
           +T AVPK TEI I G D Q VG++AA+IR  RPPEPYKGKGV+YA E + RKEGKKK
Sbjct: 121 VTFAVPKQTEIKIAGIDKQAVGEIAAKIRRIRPPEPYKGKGVRYAGEKVRRKEGKKK 177


>AGc3532 [J] COG0097 Ribosomal protein L6P/L9E Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 163

 Score =  211 bits (538), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 105/163 (64%), Positives = 127/163 (77%)

Query: 15  VTATVEGQTVKVKGPKGQLQFVVHDDVEVKFENGQVKVAPRVKTNRAQAMYGTARAQVAN 74
           +TA V+GQ V  KGPKG+L FV +DD+++K E+  V V P   T  A++ +G +R  + N
Sbjct: 1   MTANVDGQKVTAKGPKGELFFVANDDIQLKLEDNGVSVTPANGTKEARSKWGMSRTMIEN 60

Query: 75  LVEGVTKGFERKLEITGVGYRAAMQGKNLQLALGYSHDVVYAIPEGITIAVPKPTEITIT 134
           + +GV  G+ERKLEI GVGYRAA+QGKNLQLALG+SHDVVY  P GITIAVPKPTEI ++
Sbjct: 61  IFKGVKDGYERKLEINGVGYRAALQGKNLQLALGFSHDVVYEPPVGITIAVPKPTEIIVS 120

Query: 135 GNDPQRVGQVAAEIRAYRPPEPYKGKGVKYANEFIFRKEGKKK 177
           G + Q+VGQVAAEIR YR PEPYKGKGVKYA E I RKEGKKK
Sbjct: 121 GINKQQVGQVAAEIREYRGPEPYKGKGVKYAEERIVRKEGKKK 163