BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0247.0020.p         (104 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr0306 [J] COG0198 Ribosomal protein L24 Mlo Mesorhizobium loti      141   3e-34
AGc3538 [J] COG0198 Ribosomal protein L24 Atu Agrobacterium tume...   141   4e-34
BMEI0768 [J] COG0198 Ribosomal protein L24 Bme Brucella melitensis    137   4e-33
SMc01298 [J] COG0198 Ribosomal protein L24 Sme Sinorhizobium mel...   137   6e-33
CC1259 [J] COG0198 Ribosomal protein L24 Ccr Caulobacter vibrioides   115   2e-26

>mlr0306 [J] COG0198 Ribosomal protein L24 Mlo Mesorhizobium loti
          Length = 104

 Score =  141 bits (356), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 71/102 (69%), Positives = 85/102 (83%), Gaps = 1/102 (0%)

Query: 4   KIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQEGGIISKEMP 63
           KIRKGDKV+VL G+DKGR+GEV  V+P ++ ALVRG+NM++RHQKQ+Q+QEGGII+KE P
Sbjct: 3   KIRKGDKVVVLAGKDKGRSGEVLSVQPKDDTALVRGVNMIRRHQKQSQSQEGGIITKEAP 62

Query: 64  IDLSNIAYVG-KDGKPTRIGFKIQADGKKVRVAKSSGAEIDG 104
           I LSNIA    KDGKPTR+GF  Q DGKKVRVAK SG  I+G
Sbjct: 63  IQLSNIALADPKDGKPTRVGFIFQKDGKKVRVAKRSGEVING 104


>AGc3538 [J] COG0198 Ribosomal protein L24 Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 102

 Score =  141 bits (355), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 84/101 (83%), Gaps = 1/101 (0%)

Query: 4   KIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQEGGIISKEMP 63
           KIRKGD V+VLTG+DKGRTGEV +V P E++A+VRG+NMVKRHQ+QTQ QE GII+KE  
Sbjct: 3   KIRKGDNVVVLTGKDKGRTGEVIQVMPKEDRAVVRGVNMVKRHQRQTQAQEAGIINKEAS 62

Query: 64  IDLSNIAYVGKDGKPTRIGFKIQADGKKVRVAKSSGAEIDG 104
           + +SNIA V KDGKPTR+GF +  DGKKVRVAK SG  IDG
Sbjct: 63  LHISNIAIVDKDGKPTRVGFSV-VDGKKVRVAKRSGEVIDG 102


>BMEI0768 [J] COG0198 Ribosomal protein L24 Bme Brucella melitensis
          Length = 103

 Score =  137 bits (346), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 72/102 (70%), Positives = 85/102 (83%), Gaps = 2/102 (1%)

Query: 4   KIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQEGGIISKEMP 63
           KIRKGD V+VL+G+DKGR GEV +V P + +ALV GIN+VKRHQ+QTQTQE GIISKE P
Sbjct: 3   KIRKGDSVVVLSGKDKGRKGEVLKVMPKDEQALVSGINIVKRHQRQTQTQEAGIISKEAP 62

Query: 64  IDLSNIAYVG-KDGKPTRIGFKIQADGKKVRVAKSSGAEIDG 104
           I LSN+A    KDGKPTR+GF+++ DGKKVRVAK SGA IDG
Sbjct: 63  IHLSNLAIADPKDGKPTRVGFRVE-DGKKVRVAKRSGALIDG 103


>SMc01298 [J] COG0198 Ribosomal protein L24 Sme Sinorhizobium meliloti
          Length = 103

 Score =  137 bits (345), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 74/102 (72%), Positives = 84/102 (82%), Gaps = 2/102 (1%)

Query: 4   KIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQEGGIISKEMP 63
           KIRKGDKV+VLTG+DKGRTGEV +V P E++ALVRG+N+VKRHQ+QTQ QE GII+KE  
Sbjct: 3   KIRKGDKVVVLTGKDKGRTGEVIQVMPKEDRALVRGVNVVKRHQRQTQNQEAGIITKEAS 62

Query: 64  IDLSNIAYVG-KDGKPTRIGFKIQADGKKVRVAKSSGAEIDG 104
           I LSNIA    KDGKPTR+GFKI  D KKVRVAK SG  IDG
Sbjct: 63  IHLSNIAIADPKDGKPTRVGFKIDGD-KKVRVAKRSGDVIDG 103


>CC1259 [J] COG0198 Ribosomal protein L24 Ccr Caulobacter vibrioides
          Length = 104

 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 59/105 (56%), Positives = 80/105 (76%), Gaps = 2/105 (1%)

Query: 1   MAAKIRKGDKVMVLTGRDKGRTGEVFEVRPDENKALVRGINMVKRHQKQTQTQ-EGGIIS 59
           MAAKI+KGD+V+VL G+DKG+ G V +V P +N+ +V G+NMV RH K TQ   +GGI +
Sbjct: 1   MAAKIKKGDRVVVLAGKDKGKQGSVLQVLPKDNRVVVEGVNMVSRHTKPTQADPQGGIKN 60

Query: 60  KEMPIDLSNIAYVGKDGKPTRIGFKIQADGKKVRVAKSSGAEIDG 104
           KE  + +SN+A V  +GKPTR+GFKI+ D KKVRVAK++G  I+G
Sbjct: 61  KEAALHVSNVAVVDSNGKPTRVGFKIEGD-KKVRVAKTTGEVING 104