BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0246.0034.p         (126 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mll4876 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium...   112   1e-25
PA1603 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae...    93   1e-19
STM2920 [K] COG1846 Transcriptional regulators Sty Salmonella ty...    60   9e-10
SPy1960 [K] COG1846 Transcriptional regulators Spy Streptococcus...    59   3e-09
PA0424 [K] COG1846 Transcriptional regulators Pae Pseudomonas ae...    57   9e-09

>mll4876 [K] COG1846 Transcriptional regulators Mlo Mesorhizobium loti
          Length = 153

 Score =  112 bits (281), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 62/123 (50%), Positives = 82/123 (66%), Gaps = 1/123 (0%)

Query: 1   LRVALRTHTSIFVAKMIEELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRL 60
           LR A + H SIF A  I +LTPPQF+ LAKLR+VG  SQN LG LI  D+AT+ GVI+RL
Sbjct: 31  LRKAHQRHVSIFAAH-IGDLTPPQFAALAKLRDVGETSQNQLGTLIAMDAATVKGVIDRL 89

Query: 61  KSRGLIKSSKDPLDPRRRQIELTDKGRRTADAAIETIGEISGETFAPLTREEFRTLTEIL 120
           K+RGL++ SK  +D RR  + LT +GR   +  I    EI+ ET APL+ +E  T  ++L
Sbjct: 90  KARGLVELSKHEVDKRRLLVNLTAEGRDAIERLIPLAREITRETLAPLSAKEIATFMKLL 149

Query: 121 KKI 123
            K+
Sbjct: 150 AKL 152


>PA1603 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 140

 Score = 93.2 bits (230), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 51/124 (41%), Positives = 73/124 (58%)

Query: 1   LRVALRTHTSIFVAKMIEELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRL 60
           LR A + + ++F   +   LTP Q++ L +L E G C QN LGRL   D+ATI GV+ RL
Sbjct: 17  LRQANQRYAALFANGIGNGLTPTQWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERL 76

Query: 61  KSRGLIKSSKDPLDPRRRQIELTDKGRRTADAAIETIGEISGETFAPLTREEFRTLTEIL 120
             RGLI+ S DP D RR  + L+  GR   +A +    EI+ +  APL+ +E  TL  +L
Sbjct: 77  DKRGLIQRSADPDDGRRLLVSLSPAGRAELEAGLAAAREINRQALAPLSLQEQETLRGLL 136

Query: 121 KKII 124
            ++I
Sbjct: 137 ARLI 140


>STM2920 [K] COG1846 Transcriptional regulators Sty Salmonella typhimurium
           LT2
          Length = 134

 Score = 60.5 bits (145), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 38/124 (30%), Positives = 66/124 (53%), Gaps = 1/124 (0%)

Query: 1   LRVALRTHTSIFVAKMIEELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRL 60
           LR   + HT+ +  + + ELT PQ++ +  + E     Q  L        AT+  +++R+
Sbjct: 11  LRQLFQQHTARWQHE-LPELTKPQYAVMRVIAEHPGIEQVDLTEAAVSTKATLAEMLSRM 69

Query: 61  KSRGLIKSSKDPLDPRRRQIELTDKGRRTADAAIETIGEISGETFAPLTREEFRTLTEIL 120
           ++RGL+K   DPLD RRR + LT +G+    AAI     +  E    L+ EE    T+++
Sbjct: 70  ENRGLVKRENDPLDKRRRFVYLTVQGQTLLTAAIPLGDRVDDEFLGRLSAEEREQFTQLV 129

Query: 121 KKII 124
           +K++
Sbjct: 130 RKMM 133


>SPy1960 [K] COG1846 Transcriptional regulators Spy Streptococcus pyogenes
           M1 GAS
          Length = 142

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 50/105 (47%)

Query: 19  ELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRLKSRGLIKSSKDPLDPRRR 78
           +LT  QFS L  L   G    NHL   +   S  +T V+N ++  G I   KD  D R  
Sbjct: 35  DLTATQFSVLEVLYTKGCMRINHLIDSLLATSGNMTVVLNNMERNGWISKCKDKTDKRAY 94

Query: 79  QIELTDKGRRTADAAIETIGEISGETFAPLTREEFRTLTEILKKI 123
            + LTDKG R  +A +        E FA LT +E   L E+LKK 
Sbjct: 95  VVTLTDKGTRLIEAVLPKHVARVEEAFAVLTEKEQLCLIELLKKF 139


>PA0424 [K] COG1846 Transcriptional regulators Pae Pseudomonas aeruginosa
          Length = 147

 Score = 57.4 bits (137), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 36/106 (33%), Positives = 52/106 (49%)

Query: 19  ELTPPQFSTLAKLREVGSCSQNHLGRLIHYDSATITGVINRLKSRGLIKSSKDPLDPRRR 78
           +LTPP    L  + E    +   LGR +  D A IT  I  L+ R L++  ++P D R  
Sbjct: 34  DLTPPDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNLVRRERNPSDQRSF 93

Query: 79  QIELTDKGRRTADAAIETIGEISGETFAPLTREEFRTLTEILKKII 124
           Q+ LTD+G      A   +  +  E FAPLT  E  TL  +L + +
Sbjct: 94  QLFLTDEGLAIHQHAEAIMSRVHDELFAPLTPVEQATLVHLLDQCL 139