BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0246.0022.p         (97 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

APE2524 [E] COG0411 ABC-type branched-chain amino acid transport...   105   2e-23
DR0283 [E] COG0411 ABC-type branched-chain amino acid transport ...    96   2e-20
TM1138 [E] COG0411 ABC-type branched-chain amino acid transport ...    91   6e-19
BMEII0099 [E] COG0411 ABC-type branched-chain amino acid transpo...    89   2e-18
AGc4398 [E] COG0411 ABC-type branched-chain amino acid transport...    89   4e-18

>APE2524 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Ape Aeropyrum pernix
          Length = 242

 Score =  105 bits (262), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/93 (55%), Positives = 71/93 (76%)

Query: 2   LETAKALSTRPKLLLLDEVMAGLRPTEAAGIVGVLQKLAEGGLTILLVEHVMRIVMEVAS 61
           LE A+AL+T+P+LLLLDE+ AGLRP E   +V  L ++++ G+TI++VEHVMR VM  A 
Sbjct: 149 LELARALATQPELLLLDEIAAGLRPREVDDLVYTLLEISKRGITIIMVEHVMRAVMNFAE 208

Query: 62  RVVVLHHGAKIAEGPPGEVVADPKVLESYLGAG 94
           RV+VLH G KIAEG P EV ++  V+E+Y+G G
Sbjct: 209 RVIVLHFGEKIAEGTPREVASNKLVIEAYMGTG 241


>DR0283 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Dra Deinococcus radiodurans
          Length = 290

 Score = 95.9 bits (237), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 46/93 (49%), Positives = 66/93 (70%)

Query: 5   AKALSTRPKLLLLDEVMAGLRPTEAAGIVGVLQKLAEGGLTILLVEHVMRIVMEVASRVV 64
           A AL++ P LLLLDE  AG+ P E   ++G++++L  GGL+I LVEH M +VM +A  ++
Sbjct: 174 AMALASDPHLLLLDEPAAGMNPEETENLMGLIRQLVSGGLSIALVEHKMNLVMGLADDIL 233

Query: 65  VLHHGAKIAEGPPGEVVADPKVLESYLGAGFHA 97
           VLHHG KIA+G P ++  DP V+E+YLG+  H 
Sbjct: 234 VLHHGQKIAQGTPAQITRDPAVVEAYLGSHAHG 266


>TM1138 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Tma Thermotoga maritima
          Length = 284

 Score = 90.9 bits (224), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 42/97 (43%), Positives = 68/97 (70%), Gaps = 1/97 (1%)

Query: 2   LETAKALSTRPKLLLLDEVMAGLRPTEAAGIVGVLQKL-AEGGLTILLVEHVMRIVMEVA 60
           LE A+AL+T PKL+LLDE  AG+ P E   ++  ++++  +  LT+LL+EH M++VM + 
Sbjct: 187 LEIARALATEPKLILLDEPAAGMNPKETEDLMEFIKQIRKDFNLTVLLIEHDMKVVMGIC 246

Query: 61  SRVVVLHHGAKIAEGPPGEVVADPKVLESYLGAGFHA 97
            R++V+ +G  IAEG P E+  DP+V+E+YLG  + +
Sbjct: 247 ERIIVMDYGRIIAEGTPKEIQNDPRVIEAYLGREWES 283


>BMEII0099 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Bme Brucella melitensis
          Length = 205

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 68/91 (74%)

Query: 2   LETAKALSTRPKLLLLDEVMAGLRPTEAAGIVGVLQKLAEGGLTILLVEHVMRIVMEVAS 61
           LE AKAL+ + +LLL DEVMAGL   E   ++ V++K+ + G+TIL++EHVM+ +  ++ 
Sbjct: 111 LELAKALAMQLELLLCDEVMAGLNLVELEEVIEVIRKVRDSGVTILVIEHVMKAIKSLSD 170

Query: 62  RVVVLHHGAKIAEGPPGEVVADPKVLESYLG 92
           R++VLHHG KIAEG    V+++P V+++YLG
Sbjct: 171 RLMVLHHGEKIAEGSTDAVLSNPVVIKAYLG 201


>AGc4398 [E] COG0411 ABC-type branched-chain amino acid transport systems,
           ATPase component Atu Agrobacterium tumefaciens strain
           C58 (Cereon)
          Length = 297

 Score = 88.6 bits (218), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 63/91 (69%)

Query: 2   LETAKALSTRPKLLLLDEVMAGLRPTEAAGIVGVLQKLAEGGLTILLVEHVMRIVMEVAS 61
           LE A+A+ T P+LL LDE  AGL P E+  +  +L+ + + G ++LL+EH M +VM+++ 
Sbjct: 188 LEIARAMCTGPELLCLDEPAAGLNPKESLALNTLLRSIRDEGTSLLLIEHDMSVVMQISD 247

Query: 62  RVVVLHHGAKIAEGPPGEVVADPKVLESYLG 92
            VVVL +G KI++G P  V  DPKV+ +YLG
Sbjct: 248 HVVVLEYGQKISDGSPDHVKNDPKVIAAYLG 278