BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0246.0019.p (291 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0102 [E] COG0559 Branched-chain amino acid ABC-type transpo... 145 8e-35 BMEII0874_1 [E] COG0559 Branched-chain amino acid ABC-type trans... 141 2e-33 PA4912 [E] COG0559 Branched-chain amino acid ABC-type transport ... 133 5e-31 APE2522 [E] COG0559 Branched-chain amino acid ABC-type transport... 130 2e-30 AF0825 [E] COG0559 Branched-chain amino acid ABC-type transport ... 130 4e-30 >BMEII0102 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 287 Score = 145 bits (367), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 90/289 (31%), Positives = 157/289 (54%), Gaps = 6/289 (2%) Query: 4 LSLWLNVLASGILLGLVYGLVALGLTIIFGVMRVVNFAHGEMVVFGVYIGYWTVRLWNVP 63 ++L+L ++ +GILLG +Y ++A GL +++GV+ +VN AHG M++ G Y+ + + + Sbjct: 1 MNLFLQIVINGILLGGLYAIMAQGLALVWGVLNIVNLAHGTMIMLGGYVTWLVFANFGID 60 Query: 64 IIVAAAIAAVVMFVFGYLLEALIVKRFVNRPHHYQFIVFIGLSLLFSGALLVAFGPDPR- 122 + AA VMF FGY L+ ++ P ++ G+ ++F+ F D R Sbjct: 61 PFIGVFAAAAVMFCFGYALQRCVLNLVARGPMFNALLITFGIEIIFTDVAQHVFSADFRA 120 Query: 123 --PTASQLSFQTVSLGLVTLDLARLQAAATAGLLIALLGAYLKFSSFGRSLRAAADNRLG 180 P+ S ++F +T+ L L A A ++ + ++ + GR++RA A N Sbjct: 121 IIPSYSAVNFNVYG---ITIPLMNLLAFIAAFVVSGFMFFFMMTTKLGRAIRATAQNLTA 177 Query: 181 GLIVGLNIPRVYAVTFGIGAACAGVAGALISPLFDAQPYLAVDFTLLAFVTVIVGGLGSF 240 + G+ +YAVTFGIG A AGVAG L + + PY+ V T +F I+GGL + Sbjct: 178 ARLYGVEPRHLYAVTFGIGVAIAGVAGGLYATVNQLNPYIGVPLTAKSFAITIIGGLDNP 237 Query: 241 GGALLGGLVIGVAEAIAALMFTPSMKTALPYALLIIILVFRPRGFFGAK 289 G +LGGL++GV E++ L + + + +++L+++L+ RP G G Sbjct: 238 LGVILGGLILGVIESLTVLYLGDTYRNVVSFSILVLVLIIRPGGLLGKT 286 >BMEII0874_1 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Bme Brucella melitensis Length = 330 Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/270 (32%), Positives = 151/270 (55%), Gaps = 1/270 (0%) Query: 21 YGLVALGLTIIFGVMRVVNFAHGEMVVFGVYIGYWTVRLWNVPIIVAAAIAAVVMFVFGY 80 + +VA+GLT+IFG+++VVNFAHGE ++ G+++ + + A I MF+ G Sbjct: 27 FAIVAVGLTLIFGIVKVVNFAHGEFLMAGMFVTWLITTKLGLHPYAAVIIVLPAMFILGA 86 Query: 81 LLEALIVKRFV-NRPHHYQFIVFIGLSLLFSGALLVAFGPDPRPTASQLSFQTVSLGLVT 139 L + L+++ + + H Q +GLS L+ FG D T + + +G + Sbjct: 87 LTQRLLIQPLMASDDGHAQIFATVGLSTAMINLALLIFGADIANTPNFGLRTPIEIGPLR 146 Query: 140 LDLARLQAAATAGLLIALLGAYLKFSSFGRSLRAAADNRLGGLIVGLNIPRVYAVTFGIG 199 + ++ A +L+ L +LK S G ++RA A +R ++G+N+ R+Y + FG+G Sbjct: 147 VLTGQVFIFLGAIVLVVALQLFLKNSQTGHAIRAVAQHRSAAELMGVNVSRIYILCFGLG 206 Query: 200 AACAGVAGALISPLFDAQPYLAVDFTLLAFVTVIVGGLGSFGGALLGGLVIGVAEAIAAL 259 AAC G+A LI+PL+ + F L AFV V++GGLGS GA +G L+IGV + ++ Sbjct: 207 AACVGLAAVLIAPLYPTSSNIGTYFVLTAFVVVVLGGLGSIPGAFVGALIIGVIDTMSGY 266 Query: 260 MFTPSMKTALPYALLIIILVFRPRGFFGAK 289 ++ A+ + + ++IL+ +P G FG + Sbjct: 267 YIGSDLREAVVFGIFLLILILKPSGLFGKQ 296 >PA4912 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Pae Pseudomonas aeruginosa Length = 304 Score = 133 bits (334), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 101/307 (32%), Positives = 162/307 (52%), Gaps = 24/307 (7%) Query: 3 MLSLWLNVLASGILLGLVYGLVALGLTIIFGVMRVVNFAHGEMVVFGVYIGYWTVR---- 58 M ++L + +G+ LG VYGL+A+G T+++G++ ++NFAHGE+ + Y+ + Sbjct: 1 MDGIFLQQMINGLTLGSVYGLIAIGYTMVYGIIGMINFAHGEVYMISAYLSAIALALLAF 60 Query: 59 --LWNVPIIVAAAI--AAVVMFVFGYLLEALIVKRFVNRPHHYQFIVFIGLSLLFSGALL 114 L N P+++ + +V +G+++E + K N I IG+SL+ + Sbjct: 61 FGLQNFPLLILGTLLFTVLVTCTYGWVIERIAYKPLRNSTRLAPLISAIGMSLILQNYVQ 120 Query: 115 VAFGPDPR--PT--ASQLSFQTVSLGLVTLDLARLQAAATAGLLIALLGAYLKFSSFGRS 170 VA GP + PT L F V G V L +L + + +A+L ++++ GR Sbjct: 121 VAQGPRQQGIPTLLDGALKFH-VGDGFVQLTYTKLFILIASLIGMAVLTYVIRYTKLGRM 179 Query: 171 LRAAADNRLGGLIVGLNIPRVYAVTFGIGAACAGVAGALISPLFDAQPYLAVDFT----- 225 RA +R I+G+N RV + F IGAA A +AG LI+ Y DF Sbjct: 180 CRATQQDRKMASILGINTDRVISYVFVIGAAMAALAGVLIT-----MNYGTFDFYAGFII 234 Query: 226 -LLAFVTVIVGGLGSFGGALLGGLVIGVAEAIAALMFTPSMKTALPYALLIIILVFRPRG 284 + AF ++GG+GS GA+LGGLV+GVAEA + M K ++LL++IL+FRP+G Sbjct: 235 GIKAFTAAVLGGIGSLPGAMLGGLVLGVAEAQFSGMVNTDYKDVFAFSLLVLILIFRPQG 294 Query: 285 FFGAKEI 291 G +I Sbjct: 295 LLGRPQI 301 >APE2522 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Ape Aeropyrum pernix Length = 265 Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 86/265 (32%), Positives = 148/265 (55%) Query: 26 LGLTIIFGVMRVVNFAHGEMVVFGVYIGYWTVRLWNVPIIVAAAIAAVVMFVFGYLLEAL 85 +GL +I+GVM ++NFAHG+ ++ G Y+ L + + +A V++F G ++ Sbjct: 1 MGLAMIWGVMEIINFAHGDFMMLGALAAYYAFTLMGLDPLAGGVLAFVMVFALGVGVQRG 60 Query: 86 IVKRFVNRPHHYQFIVFIGLSLLFSGALLVAFGPDPRPTASQLSFQTVSLGLVTLDLARL 145 ++ R ++ P Q + L+ + GP R + V LG T+ L++L Sbjct: 61 VINRILDAPLLTQIAATFAVLLIIRYGVQAVLGPYTRRLVTWYQDYYVGLGFTTVPLSKL 120 Query: 146 QAAATAGLLIALLGAYLKFSSFGRSLRAAADNRLGGLIVGLNIPRVYAVTFGIGAACAGV 205 + +++ALL L + G ++RA + NR+ ++G+N+ RVY VTFGIG A V Sbjct: 121 LIFLVSLVILALLYILLNRTDMGIAIRATSQNRMVAQLMGINVSRVYDVTFGIGVGVAAV 180 Query: 206 AGALISPLFDAQPYLAVDFTLLAFVTVIVGGLGSFGGALLGGLVIGVAEAIAALMFTPSM 265 GAL++ + P + F L+AF+ V++GG G+ GA +GGL+IGV E+++AL P++ Sbjct: 181 GGALVALFYPIFPEMGGFFALIAFIAVVLGGFGNVYGAYVGGLIIGVTESVSALFIEPAL 240 Query: 266 KTALPYALLIIILVFRPRGFFGAKE 290 K + + L I+I++ +P G FG E Sbjct: 241 KDVVAFLLFILIIMIKPTGLFGRGE 265 >AF0825 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Afu Archaeoglobus fulgidus Length = 297 Score = 130 bits (326), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 96/297 (32%), Positives = 162/297 (54%), Gaps = 11/297 (3%) Query: 1 LLMLSLWLNVLASGILLGLVYGLVALGLTIIFGVMRVVNFAHGEMVVFGVYIGYWT---- 56 ++ ++ ++N+L G+++G +Y L ALG+TII+G++++ +F+HG + G Y G+ Sbjct: 2 MIEINYFMNLLLGGLVVGFIYALTALGITIIYGILQIPDFSHGNRYMIGAYAGFLAASVA 61 Query: 57 ---VRLWNVPIIVAAAIAAVVMFVFGYLLEALIVKRFVNRPHHYQFIVFIGLSLLFSGAL 113 + + V I+ A + V+ V YL + KR ++ PH FI IGL +L G Sbjct: 62 GSMLEISYVAAILGAVAVSSVIAVLSYLF---VYKRLLSAPHITSFIAAIGLLMLLEGFA 118 Query: 114 LVAFGPDPRPTASQLSFQTVSLGLVTLDLARLQAAATAGLLIALLGAYLKFSSFGRSLRA 173 L FGP + + + V +G + ++ RL + IA L +L+ + G +L A Sbjct: 119 LAVFGPRYQRIHTPFDYMVV-IGALRINAQRLIVLFCSIAAIASLLYFLRRTVTGIALEA 177 Query: 174 AADNRLGGLIVGLNIPRVYAVTFGIGAACAGVAGALISPLFDAQPYLAVDFTLLAFVTVI 233 A + +G +VG+N ++ + F I A AG A ALI+P+ P + + L AFV + Sbjct: 178 VAQSPIGAKLVGINTDKMTLIAFAIAGALAGFAAALIAPITLVYPIMGAELNLKAFVICV 237 Query: 234 VGGLGSFGGALLGGLVIGVAEAIAALMFTPSMKTALPYALLIIILVFRPRGFFGAKE 290 VGGLG+ GA+ GGLV+G+ E++ F K + + +L+ IL+ +P G FG KE Sbjct: 238 VGGLGNIPGAIAGGLVLGIVESLYGGYFDIRWKNLVAFGILVAILILKPEGLFGKKE 294