BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0246.0008.p         (62 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

alr2935 [M] COG0797 Lipoproteins Nos Nostoc sp. PCC 7120               71   8e-13
PA4485 [M] COG0797 Lipoproteins Pae Pseudomonas aeruginosa             66   2e-11
slr0423 [M] COG0797 Lipoproteins Syn Synechocystis                     65   5e-11
SMc00404 [M] COG0797 Lipoproteins Sme Sinorhizobium meliloti           63   1e-10
PM1926 [M] COG0797 Lipoproteins Pmu Pasteurella multocida              62   3e-10

>alr2935 [M] COG0797 Lipoproteins Nos Nostoc sp. PCC 7120
          Length = 371

 Score = 70.9 bits (172), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 46/64 (71%), Gaps = 2/64 (3%)

Query: 1   MTCAHRKRPFGSMITVSYL--GKSIRCRVNDRGPFVRGRIIDVSTTAARALGILQLGVAH 58
           MT AHR  PFG+ + V+    G+S+  R+NDRGPF RGR+ID+ST AAR LG++  GVA 
Sbjct: 304 MTAAHRSLPFGTRVRVTNTRNGRSVVVRINDRGPFTRGRVIDLSTGAARVLGMIGSGVAP 363

Query: 59  VVIQ 62
           V I+
Sbjct: 364 VRIE 367


>PA4485 [M] COG0797 Lipoproteins Pae Pseudomonas aeruginosa
          Length = 125

 Score = 66.2 bits (160), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 45/64 (70%), Gaps = 2/64 (3%)

Query: 1   MTCAHRKRPFGSMITVSYLG--KSIRCRVNDRGPFVRGRIIDVSTTAARALGILQLGVAH 58
           MT AHR  PFG+ + V+ L   +S+  R+NDRGPF RGRIIDVS  AA  LG+++ GVA 
Sbjct: 59  MTAAHRTLPFGARVRVTNLDNRRSVVVRINDRGPFRRGRIIDVSRKAAEGLGMIRSGVAP 118

Query: 59  VVIQ 62
           V I+
Sbjct: 119 VRIE 122


>slr0423 [M] COG0797 Lipoproteins Syn Synechocystis
          Length = 321

 Score = 64.7 bits (156), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 2/63 (3%)

Query: 1   MTCAHRKRPFGSMITVSYL--GKSIRCRVNDRGPFVRGRIIDVSTTAARALGILQLGVAH 58
           +T AHR  PFG+ + V+ L  G+S+  R+NDRGPF  GR+ID+S  AARA+GI   GV +
Sbjct: 255 LTAAHRTLPFGTRVKVTNLRNGQSVVVRINDRGPFTGGRVIDLSAGAARAIGIHSSGVGN 314

Query: 59  VVI 61
           V +
Sbjct: 315 VAL 317


>SMc00404 [M] COG0797 Lipoproteins Sme Sinorhizobium meliloti
          Length = 124

 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 1   MTCAHRKRPFGSMITVSYL--GKSIRCRVNDRGPFVRGRIIDVSTTAARALGILQLGVAH 58
           +T AHRK  FG+ + V+    GKS+  R+NDRGPF+RGR+ID+S  AA  +G+++ G A 
Sbjct: 57  LTAAHRKLKFGTKVQVTNKRNGKSVVVRINDRGPFIRGRVIDLSKAAASKIGMIRSGTAS 116

Query: 59  V 59
           +
Sbjct: 117 I 117


>PM1926 [M] COG0797 Lipoproteins Pmu Pasteurella multocida
          Length = 294

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 29/63 (46%), Positives = 42/63 (66%), Gaps = 2/63 (3%)

Query: 2   TCAHRKRPFGSMITVSYL--GKSIRCRVNDRGPFVRGRIIDVSTTAARALGILQLGVAHV 59
           T AH+  P  S + V+ L   + +  R+NDRGPFV+GRIID+S  AAR +G++  GV HV
Sbjct: 97  TAAHKTLPLNSYVLVTNLRNQRKVIVRINDRGPFVKGRIIDLSRAAAREIGLIGSGVGHV 156

Query: 60  VIQ 62
            ++
Sbjct: 157 RVE 159