BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0244.0024.p         (227 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2864 [E] COG0683 ABC-type branched-chain amino acid transport...    61   2e-09

>RSc2864 [E] COG0683 ABC-type branched-chain amino acid transport systems,
           periplasmic component Rso Ralstonia solanacearum
          Length = 385

 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 58/120 (48%), Gaps = 8/120 (6%)

Query: 18  VAAATGNAAWAQKKYDTGASDTEIKIGNIVPYSGPASAYGVVGKAM----AAVFRKVNDD 73
           VA   G AA+  +  +TG ++  I IG     SGPA   G +G+ M       F+ +N  
Sbjct: 14  VAGVLGMAAFGAQA-ETGVTNDAIIIGQSAAMSGPA---GKLGQQMNLGAKLYFKSINAA 69

Query: 74  GGINGRKIAFVSYDDAYSPPKAVEQARKLVESDEVLFLFGTLGTASNTAIQKYLNSKKVP 133
           GGI GRKI     DD Y P  A    + L+   +V  LFG +GT ++ A  K  N   VP
Sbjct: 70  GGIYGRKIELKVLDDFYEPEAAERNTKTLINDTKVFALFGYVGTPTSLAALKVANPAGVP 129