BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0014.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2605 [E] COG0410 ABC-type branched-chain amino acid transport... 283 3e-76 RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport... 279 4e-75 DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport... 276 2e-74 FN1428 [E] COG0410 ABC-type branched-chain amino acid transport ... 231 1e-60 SP0753 [E] COG0410 ABC-type branched-chain amino acid transport ... 230 2e-60 >AGc2605 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 240 Score = 283 bits (724), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 147/240 (61%), Positives = 182/240 (75%), Gaps = 4/240 (1%) Query: 4 LLSVTDVHISYGKVEAVRGVSLDVAPNEIVTIIGGNGAGKTTLLNAIMGVLPLKGRTTFA 63 LL + D+H++YG+ E V G+SL +A IVT+IG NGAGKTTLLNAIMGV+P +G + Sbjct: 5 LLDIRDIHVAYGRAEVVHGISLAMAAGSIVTVIGANGAGKTTLLNAIMGVIPSRGTILYD 64 Query: 64 GVDMAPLDIEDRVATGLSLVPEHRELFGTMNVEDNLELGAFRIAKAVAAASLERVYTLFP 123 G + P IE RVA GL LVPE RELFG+M VEDN+ELG F ++ + E V+ LFP Sbjct: 65 GAPV-PDTIEGRVAAGLCLVPEKRELFGSMTVEDNIELGGFLRSRQERNETREEVHALFP 123 Query: 124 RLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDEPSLGLAPIIVADIFRIVGELRA 183 RL+ER KQLAGTLSGGE+QMLA+ RALM P+LL+LDEPSLGLAP+IVA+I RIV ELR Sbjct: 124 RLRERSKQLAGTLSGGERQMLALARALMSRPRLLLLDEPSLGLAPLIVAEILRIVAELRR 183 Query: 184 AGVSVLLVEQNAQAALQIADRAYVMELGEFVLAGPATEIAANKGVAASYLGFQHEGESAI 243 GVS+LLVEQNA+AAL+IAD AY++ELGE +GPA E+A + + ASYLG GE A+ Sbjct: 184 TGVSILLVEQNARAALEIADEAYLVELGEVRRSGPAAELAVDPALMASYLG---PGEHAV 240 >RSp0707 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 247 Score = 279 bits (713), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 143/242 (59%), Positives = 180/242 (74%), Gaps = 7/242 (2%) Query: 1 MTALLSVTDVHISYGKVEAVRGVSLDVAPNEIVTIIGGNGAGKTTLLNAIMGVLPLKGR- 59 M+ +L VTD+H+ YGKVEA+ G SL V +IVT+IG NGAGK+T+L AIMG LP+ G Sbjct: 1 MSIILEVTDLHVRYGKVEALHGASLKVGAGQIVTVIGPNGAGKSTMLGAIMGALPISGSA 60 Query: 60 ---TTFAGVDMAPLDIEDRVATGLSLVPEHRELFGTMNVEDNLELGAFRIAKAVAAASLE 116 ++ G ++A L +E RVA G+ LVPE RELF TM+VEDNL LGA+R +A L+ Sbjct: 61 NGVVSYLGHNLAGLPVEKRVARGMCLVPEKRELFATMSVEDNLVLGAYRRKRAGERNYLD 120 Query: 117 R---VYTLFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDEPSLGLAPIIVAD 173 + VY LFPRLKERR+Q AGTLSGGE+QMLA+GRALM P+LLMLDEPSLGLAP+IV + Sbjct: 121 QMDVVYQLFPRLKERRRQEAGTLSGGERQMLAVGRALMAKPQLLMLDEPSLGLAPLIVKE 180 Query: 174 IFRIVGELRAAGVSVLLVEQNAQAALQIADRAYVMELGEFVLAGPATEIAANKGVAASYL 233 IF I+ LR+ GV+ LL+EQNA+AALQ+AD YV+E G+ L GPA E+A N V +YL Sbjct: 181 IFHIISNLRSTGVATLLIEQNARAALQVADYGYVLETGDMTLEGPARELAVNPRVIETYL 240 Query: 234 GF 235 G Sbjct: 241 GL 242 >DRA0260 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 238 Score = 276 bits (707), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 144/232 (62%), Positives = 178/232 (76%), Gaps = 1/232 (0%) Query: 3 ALLSVTDVHISYGKVEAVRGVSLDVAPNEIVTIIGGNGAGKTTLLNAIMGVLPLKGRTTF 62 ALL V D+H++YG+VEAV GV+L V +IV++IG NGAGK+TLL A++G LP +G + Sbjct: 7 ALLQVDDLHVAYGRVEAVTGVNLSVEAGQIVSVIGANGAGKSTLLAALIGALPSRGVIRY 66 Query: 63 AGVDMAPLDIEDRVATGLSLVPEHRELFGTMNVEDNLELGAFRIAKAVAAASLERVYTLF 122 AG D+ + +EDRVA G++LVPE RELFG+M VEDNL+LGA+ +A + L V+ F Sbjct: 67 AGRDVRQMPLEDRVAAGMTLVPERRELFGSMTVEDNLQLGAY-TQRAGMQSGLADVFRRF 125 Query: 123 PRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDEPSLGLAPIIVADIFRIVGELR 182 PRL ERRKQLAGTLSGGEQQMLA+GRALM PKLL+LDEPSLGLAP+IV DI IV ELR Sbjct: 126 PRLLERRKQLAGTLSGGEQQMLAIGRALMARPKLLLLDEPSLGLAPLIVRDILHIVAELR 185 Query: 183 AAGVSVLLVEQNAQAALQIADRAYVMELGEFVLAGPATEIAANKGVAASYLG 234 +GV+VLLVEQNA+AAL I+D YV+E G L GPA +A + V ASYLG Sbjct: 186 DSGVTVLLVEQNARAALAISDYGYVLEGGHVKLEGPAARLADDPAVVASYLG 237 >FN1428 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Fnu Fusobacterium nucleatum Length = 237 Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 113/235 (48%), Positives = 159/235 (67%), Gaps = 3/235 (1%) Query: 3 ALLSVTDVHISYGKVEAVRGVSLDVAPNEIVTIIGGNGAGKTTLLNAIMGVL-PLKGRTT 61 A+L V D+ + Y ++A++G+SL++ E+V+IIG NGAGKTT L I G++ P G Sbjct: 2 AMLEVKDLQVFYDNIQALKGISLEINEGEVVSIIGANGAGKTTTLQTISGLITPKSGSII 61 Query: 62 FAGVDMAPLDIEDRVATGLSLVPEHRELFGTMNVEDNLELGAFRIAKAVAAASLER--VY 119 F G ++ + G++ VPE R +F + V+DNL+LG F + + +R Y Sbjct: 62 FEGKNLLKEKAHNICKLGIAQVPEGRRIFSKLAVKDNLKLGQFTVKDSAEKKEEDRANFY 121 Query: 120 TLFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDEPSLGLAPIIVADIFRIVG 179 +FPR+ ER+ QLAGTLSGGEQQMLAMGRALM PKLL+LDEPS+GL+P+ V +IF ++ Sbjct: 122 KVFPRMSERKNQLAGTLSGGEQQMLAMGRALMSRPKLLILDEPSMGLSPLFVKEIFEVIK 181 Query: 180 ELRAAGVSVLLVEQNAQAALQIADRAYVMELGEFVLAGPATEIAANKGVAASYLG 234 +L+ G ++LLVEQNA+ AL I+DRAYV+E GE VL G A ++ N V +YLG Sbjct: 182 QLKEKGTTILLVEQNAKMALSISDRAYVIETGEIVLEGKAEDLLYNDRVKKAYLG 236 >SP0753 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Spn Streptococcus pneumoniae TIGR4 Length = 236 Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 116/234 (49%), Positives = 166/234 (70%), Gaps = 2/234 (0%) Query: 3 ALLSVTDVHISYGKVEAVRGVSLDVAPNEIVTIIGGNGAGKTTLLNAIMG-VLPLKGRTT 61 ++L V ++ + YG ++AVR VS +V E+V++IG NGAGKTT+L + G V P G+ Sbjct: 2 SMLKVENLSVHYGMIQAVRDVSFEVNEGEVVSLIGANGAGKTTILRTLSGLVRPSSGKIE 61 Query: 62 FAGVDMAPLDIEDRVATGLSLVPEHRELFGTMNVEDNLELGAF-RIAKAVAAASLERVYT 120 F G ++ + + VA+GLS VPE R +F + V +NLE+GAF + + A+L++V++ Sbjct: 62 FLGQEIQKMPAQKIVASGLSQVPEGRHVFPGLTVMENLEMGAFLKKNREENQANLKKVFS 121 Query: 121 LFPRLKERRKQLAGTLSGGEQQMLAMGRALMGAPKLLMLDEPSLGLAPIIVADIFRIVGE 180 FPRL+ER+ Q A TLSGGEQQMLAMGRALM PKLL+LDEPS+GLAPI + +IF I+ + Sbjct: 122 RFPRLEERKNQDAATLSGGEQQMLAMGRALMSTPKLLLLDEPSMGLAPIFIQEIFDIIQD 181 Query: 181 LRAAGVSVLLVEQNAQAALQIADRAYVMELGEFVLAGPATEIAANKGVAASYLG 234 ++ G +VLL+EQNA AL I+DR YV+E G VL+G E+A+++ V +YLG Sbjct: 182 IQKQGTTVLLIEQNANKALAISDRGYVLETGRIVLSGTGKELASSEEVRKAYLG 235