BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0244.0005.p (313 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3410 [ET] COG0834 ABC-type amino acid transport/signal transd... 233 3e-61 lin0840_1 [ET] COG0834 ABC-type amino acid transport/signal tran... 93 8e-19 CAC0380 [ET] COG0834 ABC-type amino acid transport/signal transd... 91 3e-18 mll5423 [ET] COG0834 ABC-type amino acid transport/signal transd... 89 1e-17 TM0593 [ET] COG0834 ABC-type amino acid transport/signal transdu... 86 1e-16 >RSc3410 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Rso Ralstonia solanacearum Length = 255 Score = 233 bits (595), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 111/189 (58%), Positives = 138/189 (73%) Query: 20 APSGAQQVLKVGSTPTGIPFTFLDTKTNSIQGIMVDLATEIGKDAGFTVQIEPMQFSALI 79 A G VG+T TG+PFTFLD K+NSIQG+MVD T +GK GF+V ++ F+ALI Sbjct: 25 AQGGGAPTYNVGATATGVPFTFLDVKSNSIQGMMVDTVTAVGKAGGFSVNVQQTVFAALI 84 Query: 80 PSLTANKIDIIAAAMFATAARKEVIDFSDPVYTYGEGLVVPKADTKAYASQEDLKGTVVG 139 PSLT++KIDII+AAM T AR +V+DFSDPVY+YGEGL V D K YAS +DLKG VVG Sbjct: 85 PSLTSSKIDIISAAMLKTPARAQVVDFSDPVYSYGEGLRVKADDAKTYASLDDLKGEVVG 144 Query: 140 AQVGTAFVDALKKTGLFSEVKVYDTIPDILRDVNAGRLKAGFADYPILAYNLQQGNFADV 199 AQVGT F+D L K G+F EV+ YD++ D+ RD+ GR+KAG D PILAY ++Q F V Sbjct: 145 AQVGTVFLDMLNKKGIFKEVRSYDSVADMTRDLALGRIKAGLGDQPILAYQIRQNTFQGV 204 Query: 200 RLVDGYKPV 208 +LV YKPV Sbjct: 205 KLVSSYKPV 213 >lin0840_1 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Lin Listeria innocua Length = 268 Score = 92.8 bits (229), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 103/203 (50%), Gaps = 15/203 (7%) Query: 3 FQRLV-QAAVAALALALTAPSG-----AQQVLKVGSTPTGIPFTFLDTKTNSIQGIMVDL 56 F R + AVA +A+ + +G A++ +G+ T PF F K GI +D+ Sbjct: 4 FSRFILTMAVACVAMFIFTGNGLNAKAAEETYLIGTDTTFAPFEF--EKDGKHVGIDMDI 61 Query: 57 ATEIGKDAGFTVQIEPMQFSALIPSLTANKIDIIAAAMFATAARKEVIDFSDPVYTYGEG 116 I KD F +I+ M F+A + +L AN++D + A M T RK+ DFSDP + G Sbjct: 62 LKAIAKDQNFKYEIKAMGFNAAVQALEANQVDGVIAGMSITDERKQKFDFSDPYFDSGVV 121 Query: 117 LVVPKADTKAYASQEDLKGTVVGAQVGT---AFVDALK-KTGLFSEVKVYDTIPDILRDV 172 + + K D + +DLKG V + GT AF + +K K G ++ V+D + DV Sbjct: 122 MGILK-DNDEIKNYDDLKGKKVAVKTGTEGYAFAEKIKDKYGF--DIVVFDDSAQMYDDV 178 Query: 173 NAGRLKAGFADYPILAYNLQQGN 195 A F DYP+LAY +Q GN Sbjct: 179 KTRNSVACFDDYPVLAYGVQTGN 201 >CAC0380 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Cac Clostridium acetobutylicum Length = 272 Score = 91.3 bits (225), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 75/157 (47%), Gaps = 2/157 (1%) Query: 27 VLKVGSTPTGIPFTFLDTKTNSIQGIMVDLATEIGKDAGFTVQIEPMQFSALIPSLTANK 86 VLKVG + P F D+ N + G +D+ IGK G VQI F + +L A K Sbjct: 45 VLKVGLSDDYPPMEFRDS-NNKVSGFDIDMINAIGKKMGVKVQIVTNSFDGIFVALKAKK 103 Query: 87 IDIIAAAMFATAARKEVIDFSDPVYTYGEGLVVPKADTKAYASQEDLKGTVVGAQVGTAF 146 D++ + + T RK + FSDP Y YG V K EDLKG VVG Q GT Sbjct: 104 FDMVQSCVSITDERKSTLLFSDP-YIYGGVAVFVKKSNTTIKKPEDLKGKVVGCQAGTTA 162 Query: 147 VDALKKTGLFSEVKVYDTIPDILRDVNAGRLKAGFAD 183 DALKK E K Y D D+ R++A AD Sbjct: 163 EDALKKFNGLKETKKYQQTTDAFLDLENNRIEAVVAD 199 >mll5423 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Mlo Mesorhizobium loti Length = 265 Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 57/171 (33%), Positives = 93/171 (54%), Gaps = 6/171 (3%) Query: 26 QVLKVGSTPTGIPFTFLDTKTNSIQGIMVDLATEIGKDAGFTVQIEPMQFSALIPSLTAN 85 VL VG+ PT PF + + ++ +G VD+ E K G T I + F AL + T+ Sbjct: 28 DVLNVGAYPTNPPFEYKN-ESGIFEGFEVDIVNEAAKRIGMTTDIADLGFQALFAATTSK 86 Query: 86 KIDIIAAAMFATAARKEVIDFSDPVYTYGEGLVVPKADTKAYASQEDLKGTVVG---AQV 142 +ID+ +++ TA R + F+ P Y G + K D+ A ++ DLKG +VG Sbjct: 87 RIDVAISSITITAERLKSQSFTQPYYDSDMG-IATKTDS-AVNTEADLKGKIVGVLSGST 144 Query: 143 GTAFVDALKKTGLFSEVKVYDTIPDILRDVNAGRLKAGFADYPILAYNLQQ 193 G ++V A ++ FS+VK YDT ++L D++AGR+ A +D P + Y+ + Sbjct: 145 GESWVKAHQEADGFSDVKGYDTQQNLLLDLSAGRVDAAVSDIPGMEYSFTK 195 >TM0593 [ET] COG0834 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain Tma Thermotoga maritima Length = 246 Score = 85.9 bits (211), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 75/141 (53%), Gaps = 7/141 (4%) Query: 10 AVAALALALTAPSGAQQVLK------VGSTPTGIPFTFLDTKTNSIQGIMVDLATEIGKD 63 AV+ L +++ SGA +K VG + PF F+D N I G VDLA EI + Sbjct: 6 AVSILLVSIVIFSGAIDEIKSRGYLLVGLSADFPPFEFVDENGN-IVGFDVDLAKEIARR 64 Query: 64 AGFTVQIEPMQFSALIPSLTANKIDIIAAAMFATAARKEVIDFSDPVYTYGEGLVVPKAD 123 G ++I M F LIPSL KID+I + M T RK+V+ FSDP + G+ +VV K Sbjct: 65 LGVELKIVDMTFDGLIPSLLTKKIDVIISGMTITEERKKVVAFSDPYFDAGQVIVVRKDS 124 Query: 124 TKAYASQEDLKGTVVGAQVGT 144 + EDL G V Q+GT Sbjct: 125 DFRPKTYEDLVGKTVAVQIGT 145