BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0061.p (326 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl368 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 362 e-100 SMc02418 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tra... 354 2e-97 VC0172 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 303 3e-82 RSc2869 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 277 3e-74 AGpA363 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 254 1e-67 >AGl368 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 332 Score = 362 bits (928), Expect = e-100, Method: Compositional matrix adjust. Identities = 178/320 (55%), Positives = 243/320 (75%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 ML F ++R A+ VML+V +IAF +FR AGDPV +V TS RA +R LGL+D + Sbjct: 11 MLVFIIKRLGNAVLVMLSVALIAFLIFRLAGDPVELMVGEQTSQEDRAALRERLGLNDSL 70 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 Q+ + +A Q FGVSY+ V L+AER PATLEL + AT+ ++V G+ +GV +A Sbjct: 71 PTQYLRFVKDAAQGNFGVSYRNGQQVLPLIAERFPATLELVLVATVISLVVGLPLGVLTA 130 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 +RR + Q +S++G+SLP+F++GILLI +F+V+LGW P+FGRG+VV+LGWW+TGLL Sbjct: 131 IRRGKWYTEGLQFLSIVGVSLPSFVVGILLILVFSVSLGWAPAFGRGDVVQLGWWSTGLL 190 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T SG ALI+PAI L L+Q+TL+MRLVRAEMLEVLR+D+++FARARG+ I+F HAL+ Sbjct: 191 TSSGRAALILPAIALSLYQITLVMRLVRAEMLEVLRSDFVKFARARGIPRWRIYFRHALR 250 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 N L+PV+T+ + GS+IAF++ITETVFQWPGMG+LF+QAV +DIP+MAAYL ++S IF Sbjct: 251 NCLMPVVTLTTMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLCIISFIF 310 Query: 301 VTINLVVDILYTVVDPRLRS 320 V +N VDI Y V+DPRLR+ Sbjct: 311 VVLNTFVDIAYAVIDPRLRT 330 >SMc02418 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Sme Sinorhizobium meliloti Length = 322 Score = 354 bits (908), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 172/320 (53%), Positives = 245/320 (76%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 ML F ++R A+ VMLAV ++AF +FR AGDPV + + + R +R LGL+D + Sbjct: 1 MLVFIIKRLANAVMVMLAVALLAFLIFRLAGDPVEMMANEQMTQTDRDNLRERLGLNDGL 60 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 + Q+ + +NA Q FG+SY+ V SL+AER PATLEL + ATL +++ G+ +GV +A Sbjct: 61 MTQYTRFVVNAAQGNFGISYRNGQDVLSLIAERFPATLELVLVATLISLLLGLPLGVLTA 120 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 ++R + Q +S++G+SLP+F++GILLI +F+VT GWLP+FGRG+VV+LGWW+TGLL Sbjct: 121 IKRGKWYTEGLQFISIVGVSLPSFVVGILLILVFSVTFGWLPAFGRGDVVQLGWWSTGLL 180 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T SG A+++P++ L L+Q+TL+MRLVRAEMLEVLR+DY++FARARG+ I+F HAL+ Sbjct: 181 TPSGRAAILLPSVALSLYQVTLVMRLVRAEMLEVLRSDYVKFARARGIPRWRIYFRHALR 240 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 N L+PV+T+ + GS+IAF++ITETVFQWPGMG+LF+QAV +DIP+MAAYL ++S IF Sbjct: 241 NCLMPVVTMTAMNVGSLIAFALITETVFQWPGMGMLFIQAVTFLDIPVMAAYLCIISFIF 300 Query: 301 VTINLVVDILYTVVDPRLRS 320 V +N +VDI Y V+DPRLR+ Sbjct: 301 VVLNTLVDIAYAVIDPRLRT 320 >VC0172 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Vch Vibrio cholerae Length = 342 Score = 303 bits (777), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 144/321 (44%), Positives = 221/321 (68%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 M +F ++R QA+ VM + ++AFA+ GDP+ ++V S A+R +R LGL+DP Sbjct: 18 MFSFLVKRLYQALIVMFVISLVAFAIQDNLGDPLRELVGQSVSEAERQALRDELGLNDPF 77 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 ++++ + A+Q G SY F+ P ++ ++L ATLEL ATL +V I +GVYSA Sbjct: 78 IIKYSRFVTAAVQGDLGTSYFFKRPALEVIFDKLVATLELVFGATLIIIVFSIPLGVYSA 137 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 + ++ K+ A S IGIS+P FL I+L+Y+F++ LGW PS+GRGE V L W +G Sbjct: 138 IHPKSLFTKIVMAGSSIGISIPVFLTAIMLMYVFSIELGWXPSYGRGETVNLLGWESGFF 197 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T+ GL+ L++P+I L + L +RLVR+EMLEVL ++YI+FA+A+GL I++ HALK Sbjct: 198 TLDGLRHLVLPSIALASIMLPLFIRLVRSEMLEVLSSEYIKFAQAKGLPLNKIYYQHALK 257 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 NT++PV+TV G+Q G+++A++I+TETVFQWPG G LF++A+ VD P++ AY++ V LIF Sbjct: 258 NTMLPVLTVGGVQIGTMVAYTILTETVFQWPGTGFLFLEAINRVDTPLITAYVIFVGLIF 317 Query: 301 VTINLVVDILYTVVDPRLRST 321 V N +VD+LY +++P + T Sbjct: 318 VVTNTIVDLLYGLINPTVNLT 338 >RSc2869 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Rso Ralstonia solanacearum Length = 325 Score = 277 bits (708), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 142/325 (43%), Positives = 213/325 (65%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 ML F +RR L+++ V+L + ++ F G+PV+ +++ A +LGLD P+ Sbjct: 1 MLVFLIRRLLESVAVLLVMSILVFLGVYAIGNPVDILINPQADQQDIARTIAALGLDKPL 60 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 Q+ ++ ALQ GVS+ P L+ ER+PAT EL+ A L A+V GI +G+++ Sbjct: 61 WQQYLYFLKGALQGNLGVSFAHGTPALKLIFERMPATFELAAFAMLLAIVLGIPLGLWAG 120 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 LR + V + VS++G SLPTF +G++LI +FAV LGWLPS GRGE L L Sbjct: 121 LRPNGVANRTIMTVSILGFSLPTFWVGLMLIMVFAVQLGWLPSNGRGETRLLFGIPVSFL 180 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T+ GL+ LI+P +TL L + +++RL RA E + DY++FARA+GL+ I H LK Sbjct: 181 TLDGLRHLILPGVTLSLLNIAMVIRLTRAGTQEAMLQDYVKFARAKGLSNARIVGVHVLK 240 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 N L+P++TV GLQFGSVIAFSI+TE+++ WPGMG L + ++Q +D P++ AYLL++ +F Sbjct: 241 NILIPIVTVVGLQFGSVIAFSIVTESIYAWPGMGKLIIDSIQLLDRPVIVAYLLVIVTLF 300 Query: 301 VTINLVVDILYTVVDPRLRSTVGRT 325 + INLVVD++Y V+DPR+R + R+ Sbjct: 301 ILINLVVDLIYGVLDPRVRLSESRS 325 >AGpA363 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 323 Score = 254 bits (650), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 128/319 (40%), Positives = 203/319 (63%) Query: 1 MLAFTLRRFLQAIGVMLAVGVIAFAMFRFAGDPVNQIVSIDTSAAQRAEIRHSLGLDDPV 60 M + ++R +QAI V LA+ +I F G P+ ++ + + R + LGLD P+ Sbjct: 1 MTLWIVQRLMQAILVALAMALIVFVGLHLIGSPIETLLPPEATYDDRLRLIADLGLDRPL 60 Query: 61 LVQFGHYFINALQFKFGVSYQFRLPVSSLLAERLPATLELSICATLFAMVAGILMGVYSA 120 QF + LQ GVSY ++ P L+ RLPATLEL+ A L +++ G+ +G+ + Sbjct: 61 YEQFFLFLKGLLQGNLGVSYVYKEPAVELILSRLPATLELAFAAVLLSLIVGVPLGLAAG 120 Query: 121 LRRDTVLAKLFQAVSLIGISLPTFLIGILLIYLFAVTLGWLPSFGRGEVVKLGWWTTGLL 180 + ++ LA++ S+ G SLP F I +LLI +F+V LGWLPS GRG L + Sbjct: 121 WKPESPLARIIMIGSIFGFSLPIFWIAVLLIMIFSVQLGWLPSSGRGATEILFGIPWSFV 180 Query: 181 TVSGLKALIMPAITLGLFQMTLIMRLVRAEMLEVLRTDYIRFARARGLTTRAIHFGHALK 240 T+ GL+ +++PAI+L LF ++++ RL A + E + ++Y+RFARA+GL+ + I H LK Sbjct: 181 TLDGLRHMLLPAISLSLFNISMVTRLTEAGVREAMSSEYVRFARAKGLSPKRILSVHVLK 240 Query: 241 NTLVPVITVAGLQFGSVIAFSIITETVFQWPGMGLLFVQAVQNVDIPIMAAYLLMVSLIF 300 N ++PV+TV GL G IAFS++TET+F WPG+G + + ++ +D P++ AYL++V ++F Sbjct: 241 NVMIPVVTVVGLDIGQTIAFSVVTETIFAWPGVGKIIIDSIAALDRPVIVAYLMLVVVMF 300 Query: 301 VTINLVVDILYTVVDPRLR 319 V INLVVD+ Y ++DPR+R Sbjct: 301 VIINLVVDVTYRLLDPRIR 319