BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0060.p (531 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl975GM [E] COG0747 ABC-type dipeptide transport system, peripl... 362 1e-99 SMc02417 [E] COG0747 ABC-type dipeptide transport system, peripl... 354 4e-97 SMc02415 [E] COG0747 ABC-type dipeptide transport system, peripl... 330 4e-90 RSc2870 [E] COG0747 ABC-type dipeptide transport system, peripla... 275 2e-73 VC0171 [E] COG0747 ABC-type dipeptide transport system, periplas... 266 8e-71 >AGl975GM [E] COG0747 ABC-type dipeptide transport system, periplasmic component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 510 Score = 362 bits (929), Expect = 1e-99, Method: Compositional matrix adjust. Identities = 211/509 (41%), Positives = 288/509 (56%), Gaps = 18/509 (3%) Query: 24 QTLKYANQGELKSLDPYTLKETTTIAHHAHVYEGLTARDKDLKIIPALAESWETLSPTKW 83 +TL++ + +L SLDPY++ T+ +A H+YEGL D +I PALA W+ + W Sbjct: 13 ETLRWGGRADLYSLDPYSVPSTSNLAFLNHIYEGLVRYGPDFQIEPALATEWKLIDGKAW 72 Query: 84 RFHLRKGVKFHNGDPFTADDVLFSAERVRAKGSNFLSNVPADAKFSKVDDYTVDVTLDSP 143 RF LRKGVKFH+G FTADDV+ S R S N+P A KVDDYTVD+ + +P Sbjct: 73 RFTLRKGVKFHDGSDFTADDVVASFTRASDATSPLRGNIPVFAGVKKVDDYTVDLEVSAP 132 Query: 144 NPILISQWDSWYIMDKKWCEENNSVAPTPASATTPSYAALHENGTGPFTIESHQPGVKTV 203 + ++ + +I + KW ++NNS PT ++ Y +H NGTGPF +ES P KTV Sbjct: 133 TSLFLNDITNIFIFNAKWLKDNNSEKPTDFASKVDGYTTMHTNGTGPFKLESRVPDSKTV 192 Query: 204 FKAFAGYWRKPEHNLKEIIFTPIGSDATRVAALLSGEVDVIEPVPLQDIQRVNSSGVATV 263 A G+W + +HNL I F PI S ATRVAALLSGE+D+I+ P+QD+ R+ SS +V Sbjct: 193 LVANEGWWDQKKHNLDRIEFVPIASAATRVAALLSGEIDLIDSAPIQDLPRLESSPNISV 252 Query: 264 MTAPEIRTIFIGMDTARDELLYSNIKGK-NPFKDIRVREAFYKTIDVDLIKTRVMRGMST 322 E+RT+FIG + R E L GK NPF D+RVR+AF +ID DLI +VMRG++ Sbjct: 253 KKRTELRTLFIGFN--RREKLED---GKPNPFNDLRVRQAFEASIDRDLINKKVMRGLAR 307 Query: 323 PSTLMIAPELYPLSKEF-TRPKLDPDGAKKLLADAGYPNGFEVTMDCPNDRYVNDAAICQ 381 PS +IAPE+ +K T DP A+KLLADAG N T C ND VN+ IC Sbjct: 308 PSGSLIAPEIAGYAKSLDTFEPADPAKAQKLLADAGMKN-LAFTYTCMNDESVNEEDICS 366 Query: 382 AVVGMLARIGVKVNLLAQPKAQYFAKVLKPGGYQTSFFMLGW-TPATSDSHNVLHDILGC 440 V ML R G + + P++ + K G + F L W T D+ ++L IL Sbjct: 367 GVANMLKRGGFQPTIDIAPRS---VQSPKRNGGKADVFNLSWANEPTLDAFSMLSQILST 423 Query: 441 RDDPKDATRGEANLGGYCNKDVDALTDKVLIEGDTAKRDQLIKQAYDIVIKDYGYIPLHQ 500 R G +N GG+ N ++D L + E D KR L + A I + +PLHQ Sbjct: 424 R----KGAMGVSNYGGWSNPEIDKLVAQAAQEQDNTKRLALEEAALKIAKDETMLVPLHQ 479 Query: 501 QPLVWGVSKKVKLTQ-RADNQVLLYWATK 528 QP+ W + KVK RADN+ +W T+ Sbjct: 480 QPIAWAMLAKVKSVDFRADNKP-RHWLTQ 507 >SMc02417 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Sme Sinorhizobium meliloti Length = 520 Score = 354 bits (908), Expect = 4e-97, Method: Compositional matrix adjust. Identities = 213/526 (40%), Positives = 299/526 (56%), Gaps = 17/526 (3%) Query: 10 AAVAFVAFAWPASAQTLKYANQGELKSLDPYTLKETTTIAHHAHVYEGLTARDKDLKIIP 69 AA + A+TLK+ ++ SLDPY+ ++ T++ HVYEGL D +LKI P Sbjct: 8 AATMLMGLTLSGHAETLKWGAARDIYSLDPYSYGDSYTLSFLNHVYEGLVRYDANLKIEP 67 Query: 70 ALAESWETLSPTKWRFHLRKGVKFHNGDPFTADDVLFSAERVRAKGSNFLSNVPADAKFS 129 ALAESWET+S T WRFHLRKGVKFH+G FTADDVL S +RV S N+PA Sbjct: 68 ALAESWETVSDTVWRFHLRKGVKFHDGAEFTADDVLASLKRVSDPVSPLRGNLPAYKSSK 127 Query: 130 KVDDYTVDVTLDSPNPILISQWDSWYIMDKKWCEENNSVAPTPASATTPSYAALHENGTG 189 KVDD+T+D+ L P P+L++ + ++ D W + NNS PT A YA H NGTG Sbjct: 128 KVDDHTIDIELSGPYPLLLNDLTNIHVFDAGWLKTNNSEKPTDVGAKIEGYATYHTNGTG 187 Query: 190 PFTIESHQPGVKTVFKAFAGYWRK-PEHNLKEIIFTPIGSDATRVAALLSGEVDVIEPVP 248 PF +ES P KTV +W K + N+ I FTPI S ATRVAALLSGEV+ E P Sbjct: 188 PFKLESRVPDSKTVLVKNPDWWDKTSKSNVDRIEFTPITSAATRVAALLSGEVNFTENAP 247 Query: 249 LQDIQRVNSSGVATVMTAPEIRTIFIGMDTARDELLYSNIKGKNPFKDIRVREAFYKTID 308 QD+ R+ + VM ++RT+ +G + + EL + +N F D+RVR+AF +D Sbjct: 248 SQDLPRLQAQPDLKVMERTDLRTVMVGFNR-KPELANGS---ENKFNDLRVRQAFAHALD 303 Query: 309 VDLIKTRVMRGMSTPSTLMIAPELYPLSKEF-TRPKLDPDGAKKLLADAGYPNGFEVTMD 367 DLI+ RVMRG S + ++APE+ + E T DP +KKLLA+AG + + T+ Sbjct: 304 RDLIQQRVMRGKSRTAGAVVAPEIPGYAPELDTTLAFDPALSKKLLAEAGASD-YPFTLV 362 Query: 368 CPNDRYVNDAAICQAVVGMLARIGVKVNLLAQPKAQYFAKVLKPGGYQTSFFMLGW-TPA 426 C D YVN+ +CQ +V +L+R G K L P A A+ K ++ +++GW T Sbjct: 363 CTTDAYVNEEELCQGLVNLLSRAGFKPQLDIAPTA---AQAPKRTSGKSDVYLIGWATEP 419 Query: 427 TSDSHNVLHDILGCRDDPKDATRGEANLGGYCNKDVDALTDKVLIEGDTAKRDQLIKQAY 486 DS+++L ++ K A G N GG+ ++D L + E D KR L +A Sbjct: 420 MLDSYSILLQMIQT----KTANAGVFNWGGWSYPEIDKLIVQASTEMDRTKRLALQSKAL 475 Query: 487 DIVIKDYGYIPLHQQPLVWGVSKKV-KLTQRADNQVLLYWATKQGE 531 +V + +PLHQQP+ W +S K+ K+ Q DN+ +W T+ E Sbjct: 476 QMVKDEIVMLPLHQQPMAWVMSNKIDKIVQLPDNKP-RHWLTQFAE 520 >SMc02415 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Sme Sinorhizobium meliloti Length = 526 Score = 330 bits (847), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 195/509 (38%), Positives = 286/509 (56%), Gaps = 18/509 (3%) Query: 27 KYANQGELKSLDPYTLKETTTIAHHAHVYEGLTARDKDLKIIPALAESWETLSPTKWRFH 86 ++ ++ ++ SLDP ++ T+ +A H+YEGL + +I PALA W+ + WRF Sbjct: 32 RWGSRADIYSLDPDSVPSTSNLAFLNHIYEGLIRYGPNFEIEPALATEWKLIDSKHWRFT 91 Query: 87 LRKGVKFHNGDPFTADDVLFSAERVRAKGSNFLSNVPADAKFSKVDDYTVDVTLDSPNPI 146 LRKGVKFH+G FTADDV+ S RV S N+P KVDD+TVD+ + +P+ + Sbjct: 92 LRKGVKFHDGADFTADDVVASMNRVSDPTSPLRGNIPLYVGVKKVDDFTVDIEVSAPSAL 151 Query: 147 LISQWDSWYIMDKKWCEENNSVAPTPASATTPSYAALHENGTGPFTIESHQPGVKTVFKA 206 ++ + ++ KW ++NN+ PT ++ T +YA + NGTGPF +ES P KTV Sbjct: 152 FLNDMSNIFMFSAKWLKDNNAEKPTDIASNTENYATHNTNGTGPFKLESRVPDSKTVLLV 211 Query: 207 FAGYWRKPEHNLKEIIFTPIGSDATRVAALLSGEVDVIEPVPLQDIQRVNSSGVATVMTA 266 +W + +HNL I + PI S ATRVAALLS E+D+++ P+QD+ R+ SS TV Sbjct: 212 NDQWWDQKKHNLDRIEYIPISSAATRVAALLSSEIDLLDSAPIQDLPRLESSPGITVSKR 271 Query: 267 PEIRTIFIGMDTARDELLYSNIKGK-NPFKDIRVREAFYKTIDVDLIKTRVMRGMSTPST 325 E+RT+FIG + +++L G+ NPF D+RVR+A +ID DLI ++MRG++ PS Sbjct: 272 TELRTVFIGFN-GKEKLE----DGRPNPFLDLRVRQAVEASIDRDLINKKIMRGLARPSG 326 Query: 326 LMIAPELYPLSKEF-TRPKLDPDGAKKLLADAGYPNGFEVTMDCPNDRYVNDAAICQAVV 384 +IAPE+ +K T D A+KLL DAG + T C ND +N+ IC + Sbjct: 327 SLIAPEIAGYAKSLDTYQPADSKLAQKLLEDAGQKD-LAFTYLCMNDESINEEDICSGIA 385 Query: 385 GMLARIGVKVNLLAQPKAQYFAKVLKPGGYQTSFFMLGW-TPATSDSHNVLHDILGCRDD 443 ML R G + + P+A + K + F L W T D++++L +L R Sbjct: 386 NMLKRAGFQPTIDMGPRA---VQQPKRTNGKADMFNLSWANEPTLDAYSLLSQVLSTR-- 440 Query: 444 PKDATRGEANLGGYCNKDVDALTDKVLIEGDTAKRDQLIKQAYDIVIKDYGYIPLHQQPL 503 + G +N GG+ ++D L K E DTAKR L +QA I IPLHQQP+ Sbjct: 441 --SGSTGVSNYGGWSYPELDDLVKKAAQEPDTAKRLALEEQALKIAKDKAILIPLHQQPI 498 Query: 504 VWGVSKKVKLTQ-RADNQVLLYWATKQGE 531 WG+ KVK RADN+ +W T+ E Sbjct: 499 AWGMLDKVKSVDFRADNKP-RHWHTQMAE 526 >RSc2870 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Rso Ralstonia solanacearum Length = 509 Score = 275 bits (703), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 177/512 (34%), Positives = 254/512 (49%), Gaps = 31/512 (6%) Query: 21 ASAQTLKYANQGELKSLDPYTLKETTTIAHHAHVYEGLTARDKDLKIIPALAESWETLSP 80 A A LK S+DP+ + I H++E L D D I+P LAESW+ ++ Sbjct: 8 ALATDLKIGMSSPPTSMDPHFYNLFSNINVSEHMFECLVKMDADSHIVPGLAESWKMVNN 67 Query: 81 TKWRFHLRKGVKFHNGDPFTADDVLFSAER----VRAKGSNFLSNVPADAKFSKVDDYTV 136 W F LR GVKFH+G T +DV +S +R V + G F + A +D YT+ Sbjct: 68 LTWEFKLRPGVKFHDGSELTTEDVAWSLDRPATIVNSPG-KFDTYTKAIIHKKIIDKYTI 126 Query: 137 DVTLDSPNPILISQWDSWYIMDKKWCEENNSVAPTPASATTPSYAALHENGTGPFTIESH 196 +T P P+++S S +I+ KK + +S GTGPF S+ Sbjct: 127 QLTTSQPYPLMLSDLTSVFIVQKKATQGLSSDDFAQGKGMV---------GTGPFKFVSY 177 Query: 197 QPGVKTVFKAFAGYWR-KPEHNLKEIIFTPIGSDATRVAALLSGEVDVIEPVPLQDIQRV 255 + YW KP + + F P G ATR+AALLSG+V IE VP D+ RV Sbjct: 178 ARDDRVELVRNDQYWGPKPAWDKVTLRFIPNG--ATRIAALLSGDVQAIENVPTPDLARV 235 Query: 256 NSSGVATVMTAPEIRTIFIGMDTARDELLYSNIKGK-------NPFKDIRVREAFYKTID 308 + R I++ D RD ++ GK NP KD RVR A TI+ Sbjct: 236 RGDASLNFFSKISHRVIYLYTDDKRDPT--PDVTGKDGKPLAKNPLKDPRVRRAMSMTIN 293 Query: 309 VDLIKTRVMRGMSTPSTLMIAPELYPLSKEFTRPKLDPDGAKKLLADAGYPNGFEVTMDC 368 IK R+M G++ P+ ++ P+L+ + K DP+GAKKLLA+AGYP+GF +T+ Sbjct: 294 RQGIKDRIMEGLAEPTDNLVPPQLFGYNPNLKTLKYDPEGAKKLLAEAGYPDGFGITLHT 353 Query: 369 PNDRYVNDAAICQAVVGMLARIGVKVNLLAQPKAQYFAKVLKPGGYQTSFFMLGWTPATS 428 PN+RYVND I Q + L RIG+ + P A + AK ++ ++ SF ++GW T Sbjct: 354 PNNRYVNDEKIAQTIAQNLTRIGIVTKVEGMPMATFAAKSIR---HEYSFGLVGWGAQTG 410 Query: 429 DSHNVLHDILGCRDDPKDATRGEANLGGYCNKDVDALTDKVLIEGDTAKRDQLIKQAYDI 488 + + L ++ C D K G N G YCN +DA+ DK L D +R +L+++A I Sbjct: 411 EVSSPLRALVACEDARKG--YGTVNWGQYCNPKMDAVLDKALYTMDDKERSRLLQEATAI 468 Query: 489 VIKDYGYIPLHQQPLVWGVSKKVKLTQRADNQ 520 V+ D G IP+H Q W K T R D + Sbjct: 469 VVDDGGIIPVHFQVTTWAARKGFTYTPRTDER 500 >VC0171 [E] COG0747 ABC-type dipeptide transport system, periplasmic component Vch Vibrio cholerae Length = 542 Score = 266 bits (680), Expect = 8e-71, Method: Compositional matrix adjust. Identities = 164/482 (34%), Positives = 251/482 (52%), Gaps = 22/482 (4%) Query: 36 SLDPYTLKETTTIAHHAHVYEGLTARDKDLKIIPALAESWETLSPTKWRFHLRKGVKFHN 95 S+DP+ T+ V++ L + ++ P LAESW+ + RF LRKGVKFH+ Sbjct: 60 SMDPHEQLSGGTLQLSHMVFDPLIRFTQKMEFEPRLAESWQRVDNETMRFTLRKGVKFHS 119 Query: 96 GDPFTADDVLFSAERVRAKGSNFLSNVPADAKFSKVDDYTVDVTLDSPNPILISQWDSWY 155 G+ FTADDV+++ R++ + ++F +KVDDYT+++ P++ + + Sbjct: 120 GNDFTADDVVWTFNRLK-ESADFKGIFEPLVSLTKVDDYTIEIKTAGTYPLIENVATYIF 178 Query: 156 IMDKKWCEENNSVAPTPASATT--PSYAALHENGTGPFTIESHQPGVKTVFKAFAGYWRK 213 MD K+ + A S+A+ + +GTGPFT+ + + GVK F+ YW K Sbjct: 179 PMDSKFYTGTTADGKNKAEIVKHGNSFASENISGTGPFTVTAREQGVKLEFQRNPNYWDK 238 Query: 214 PEH-NLKEIIFTPIGSDATRVAALLSGEVDVIEPVPLQDIQRVNSSGVATVMTAPEIRTI 272 N+ ++ I DATRVAALLSG VD+I PV D QR+ + + T P R I Sbjct: 239 ASKGNVDKLTLAVIKEDATRVAALLSGGVDMIAPVSPNDYQRIKDAKGVDLFTMPGTRVI 298 Query: 273 FIGMDTARDELLYSNIKGKNP-FKDIRVREAFYKTIDVDLIKTRVMRGMSTPSTLMIAPE 331 M+ + NP KD+RVR+A I+ + I +VM+G +T + +P Sbjct: 299 TFQMN-----------QNSNPALKDVRVRQAIVYAINNEGIVDKVMKGAATTAAQQ-SPV 346 Query: 332 LYPLSKEFTRPKLDPDGAKKLLADAGYPNGFEVTMDCPNDRYVNDAAICQAVVGMLARIG 391 Y E +P+ D + AK+L+ +AGY GF +TM PN+RYVND I QA ML++IG Sbjct: 347 GYAGYNENLKPRFDLNKAKELMKEAGYEKGFNLTMIAPNNRYVNDEKIAQAASAMLSKIG 406 Query: 392 VKVNLLAQPKAQYFAKVLKPGGYQTSFFMLGWTPATSDSHNVLHDILGCRDDPKDATRGE 451 +KV+L PKAQY+ + K M+GW P T DS N + RD + +G+ Sbjct: 407 IKVDLKTMPKAQYWPEFDKCAA---DMLMIGWHPDTEDSANFTEFLTMTRD--SNTGKGQ 461 Query: 452 ANLGGYCNKDVDALTDKVLIEGDTAKRDQLIKQAYDIVIKDYGYIPLHQQPLVWGVSKKV 511 N G Y N +VD L + E D KR ++K+ +I+ + ++PLH Q W + Sbjct: 462 YNCGYYSNAEVDKLVNAANEETDLEKRSTMLKKVEEILYNEAAFVPLHFQDPSWAAKNTL 521 Query: 512 KL 513 + Sbjct: 522 DI 523