BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0033.p (443 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2875 Non COG 556 e-158 paaK [H] COG1541 Coenzyme F390 synthetase Eco Escherichia coli K12 536 e-152 BH0195 [H] COG1541 Coenzyme F390 synthetase Bha Bacillus halodurans 451 e-126 DRA0256 [H] COG1541 Coenzyme F390 synthetase Dra Deinococcus rad... 432 e-121 MTH1855 [H] COG1541 Coenzyme F390 synthetase Mth Methanothermoba... 428 e-119 >RSc2875 Non COG Length = 436 Score = 556 bits (1432), Expect = e-158, Method: Compositional matrix adjust. Identities = 279/431 (64%), Positives = 320/431 (74%), Gaps = 9/431 (2%) Query: 17 LDAAERASRDEIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVHPSDFRQLPDLAKFPFT 76 LD E ASRD + ALQ RL SL HAY NV YR FDA GVHPSD R L DLA+FPFT Sbjct: 10 LDPIETASRDAVQALQLERLRHSLAHAYANVPAYRAKFDAVGVHPSDLRALGDLARFPFT 69 Query: 77 VKTDLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTRADIDTWADVMARSIRAAGG 136 K DLR+NYPF MFAVP+E++ R+HASSGTTGKP VVGYT ADIDTWA ++ARSIRAAG Sbjct: 70 TKADLRENYPFGMFAVPQERIARIHASSGTTGKPTVVGYTLADIDTWAGLVARSIRAAGA 129 Query: 137 RTGMLMHNAYGYGLFTGGLGAHYGAERLGCTVIPISGGMTERQVQLVNDFRPDIITVTPS 196 R G +H +YGYGLFTGGLGAHYGAER G TVIP GG TERQVQL+ DF+P II VTPS Sbjct: 130 RRGDKVHVSYGYGLFTGGLGAHYGAERAGLTVIPFGGGQTERQVQLIRDFQPQIIMVTPS 189 Query: 197 YMLAILDEFKRQGLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFDMDATDIYGLSEVIGPG 256 YMLAI DEF RQGLDP +SSL+ GIFGAEPWT MR IE + A DIYGLSEV+GPG Sbjct: 190 YMLAIADEFVRQGLDPAQSSLRIGIFGAEPWTPEMRTVIEARMGLSAVDIYGLSEVMGPG 249 Query: 257 VAQECVETKDGLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTSLTKEAFPIIRYRTRDL 316 VA EC ETKDG IWEDHFYPE+IDP TG VLPDG GELVFTSLTKEA P++RYRTRDL Sbjct: 250 VASECAETKDGPTIWEDHFYPEIIDPETGTVLPDGAFGELVFTSLTKEAMPVVRYRTRDL 309 Query: 317 TRLLPGSARPGMRRMEKVTGRSDDMIILRGVNVFPTQIEEALLATDWCGGHFVIELTREG 376 TRLLPG+ARP RRMEK+TGR DDM+I+RGVNVFP+QIEE +L H+ L +EG Sbjct: 310 TRLLPGTARPAFRRMEKITGRCDDMMIVRGVNVFPSQIEELILKHAALSPHYQCVLAKEG 369 Query: 377 RMDEMTVLAEAR----PESWDGEGLVVHAEKVSAFIKNTIGISTRVRVVAPETLERSLGK 432 +D +TV EA E D G +++ IK IG++ + ++A +ERS+GK Sbjct: 370 PLDTLTVRVEAALGTPAEVADAAG-----GQLAHDIKAMIGVTAAIELLAVGGVERSVGK 424 Query: 433 AKRVYDKRPKQ 443 A+RV D R Q Sbjct: 425 ARRVVDLRRGQ 435 >paaK [H] COG1541 Coenzyme F390 synthetase Eco Escherichia coli K12 Length = 437 Score = 536 bits (1381), Expect = e-152, Method: Compositional matrix adjust. Identities = 261/434 (60%), Positives = 327/434 (75%), Gaps = 12/434 (2%) Query: 14 HAELDAAERASRDEIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVHPSDFRQLPDLAKF 73 + +LD E AS DE+ ALQT+RL W+LKHAY+NV YR+ FDAAGVHP DFR+L DL KF Sbjct: 4 NTKLDPIETASVDELQALQTQRLKWTLKHAYENVPMYRRKFDAAGVHPDDFRELSDLRKF 63 Query: 74 PFTVKTDLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTRADIDTWADVMARSIRA 133 P T K DLRDNYPF+ FAVP EQ+VR+HASSGTTGKP VVGYT+ DID WA+++ARS+RA Sbjct: 64 PCTTKQDLRDNYPFDTFAVPMEQVVRIHASSGTTGKPTVVGYTQNDIDNWANIVARSLRA 123 Query: 134 AGGRTGMLMHNAYGYGLFTGGLGAHYGAERLGCTVIPISGGMTERQVQLVNDFRPDIITV 193 AGG +H AYGYGLFTGGLGAHYGAERLG TVIP+SGG TE+Q QL+ DF+PD+I V Sbjct: 124 AGGSPKDKIHVAYGYGLFTGGLGAHYGAERLGATVIPMSGGQTEKQAQLIRDFQPDMIMV 183 Query: 194 TPSYMLAILDEFKRQ-GLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFDMDATDIYGLSEV 252 TPSY L +++E +RQ G D SL+ G+FGAEPWT AMR EIE+ + A DIYGLSEV Sbjct: 184 TPSYCLNLIEELERQLGGDASGCSLRVGVFGAEPWTQAMRKEIERRLGITALDIYGLSEV 243 Query: 253 IGPGVAQECVETKDGLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTSLTKEAFPIIRYR 312 +GPGVA EC+ET DG IWEDHFYPE+++P G L DGE GEL+FT+LTKEA P+IRYR Sbjct: 244 MGPGVAMECLETTDGPTIWEDHFYPEIVNPHDGTPLADGEHGELLFTTLTKEALPVIRYR 303 Query: 313 TRDLTRLLPGSARPGMRRMEKVTGRSDDMIILRGVNVFPTQIEEALLATDWCGGHFVIEL 372 TRDLTRLLPG+AR MRRM++++GRSDDM+I+RGVNVFP+Q+EE ++ + H+ +E+ Sbjct: 304 TRDLTRLLPGTART-MRRMDRISGRSDDMLIIRGVNVFPSQLEEEIVKFEHLSPHYQLEV 362 Query: 373 TREGRMDEMTVLAEARPESWDGEGLVVHAEKVSAF------IKNTIGISTRVRVVAPETL 426 R G +D ++V E + S + H ++ IK+ +GIST V +V ++ Sbjct: 363 NRRGHLDSLSVKVELKESSLT----LTHEQRCQVCHQLRHRIKSMVGISTDVMIVNCGSI 418 Query: 427 ERSLGKAKRVYDKR 440 RS GKA RV+D R Sbjct: 419 PRSEGKACRVFDLR 432 >BH0195 [H] COG1541 Coenzyme F390 synthetase Bha Bacillus halodurans Length = 445 Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust. Identities = 217/433 (50%), Positives = 290/433 (66%), Gaps = 10/433 (2%) Query: 18 DAAERASRDEIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVHPSDFRQLPDLAKFPFTV 77 D E S +E LQT L ++K Y+NV YRKAF V P D + L D+ K PFT Sbjct: 5 DQVETLSLEEKEKLQTYHLKSTVKLVYENVPFYRKAFQEVDVKPEDIQSLNDVQKLPFTQ 64 Query: 78 KTDLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTRADIDTWADVMARSIRAAGGR 137 K LR+NYPF++ AVP ++VR+H SSGT+GKP VV YT+ D++ W+ ++ARSI AGGR Sbjct: 65 KHHLRENYPFHLLAVPLNEVVRLHGSSGTSGKPTVVAYTQKDLEHWSSIIARSIYMAGGR 124 Query: 138 TGMLMHNAYGYGLFTGGLGAHYGAERLGCTVIPISGGMTERQVQLVNDFRPDIITVTPSY 197 G L+HNAYGYGLFTGGLG H G+E+LGC +PISGG T+RQ+ L+ DF+P +I TPSY Sbjct: 125 KGDLLHNAYGYGLFTGGLGLHGGSEKLGCVTVPISGGNTQRQITLIQDFKPRVICGTPSY 184 Query: 198 MLAILDEFKRQGLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFDMDATDIYGLSEVIGPGV 257 ++ I + K+ G+DP +S+++ I G+EPW+ MR +E F+M A DIYGLSEVIGPGV Sbjct: 185 IMNIGETMKKMGIDPASTSIQYAILGSEPWSEEMRKNLETMFNMKAMDIYGLSEVIGPGV 244 Query: 258 AQECVETKDGLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTSLTKEAFPIIRYRTRDLT 317 ECVE ++GLHI +DHFYPE+IDP+T + LPDGE+GELVFT+L KEA P+IRYRT D+ Sbjct: 245 GMECVECQNGLHIADDHFYPEIIDPITLECLPDGEEGELVFTTLQKEALPVIRYRTGDIA 304 Query: 318 RLL--PGSARPGMRRMEKVTGRSDDMIILRGVNVFPTQIEEALLATDWCGGHFVIELTRE 375 L P RM +V GR DDM+I+RGVNVFP++IE+ +L D H+ + L + Sbjct: 305 SLTREPCECGRTTARMSRVKGRVDDMLIIRGVNVFPSEIEQCILKMDELDCHYQLHLVKN 364 Query: 376 GRMDEMTVLAEARPESW--DGEGLVVHAE------KVSAFIKNTIGISTRVRVVAPETLE 427 G +DE+ + E + E + D G + H K+ +K + +S V + P TL Sbjct: 365 GALDEVALHVELKDEYYTLDLHGDLNHPHASLLKGKIQQTLKQEMLVSMDVHLKEPGTLP 424 Query: 428 RSLGKAKRVYDKR 440 R GKAKR+ DKR Sbjct: 425 RFEGKAKRIVDKR 437 >DRA0256 [H] COG1541 Coenzyme F390 synthetase Dra Deinococcus radiodurans Length = 426 Score = 432 bits (1111), Expect = e-121, Method: Compositional matrix adjust. Identities = 215/417 (51%), Positives = 280/417 (67%), Gaps = 9/417 (2%) Query: 27 EIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVHPSDFRQLPDLAKFPFTVKTDLRDNYP 86 ++ ALQ +L + Y+ V YR FDA GV P D + L DLA+FP T K+DLR+NYP Sbjct: 13 QLRALQLAQLQVMVARQYERVPAYRAKFDALGVRPDDLQTLDDLARFPLTRKSDLRENYP 72 Query: 87 FNMFAVPREQLVRVHASSGTTGKPIVVGYTRADIDTWADVMARSIRAAGGRTGMLMHNAY 146 + A R+QL R+HASSGTTGKP VV Y D++ ++DV+ARS+ AAGGR GM HNAY Sbjct: 73 LGLLATDRDQLRRIHASSGTTGKPTVVAYDANDLNVFSDVVARSLYAAGGRPGMTFHNAY 132 Query: 147 GYGLFTGGLGAHYGAERLGCTVIPISGGMTERQVQLVNDFRPDIITVTPSYMLAILDEFK 206 GYGLFTGGLG H GAERLG +PISGG TE+QVQL+ D P II TPSY L + + Sbjct: 133 GYGLFTGGLGTHGGAERLGMCTVPISGGGTEKQVQLIQDLEPQIIACTPSYALVLAEALG 192 Query: 207 RQGLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFDMDATDIYGLSEVIGPGVAQECVETKD 266 R G+ P SL++ + GAEPW+N R E+E + AT+IYGLSE+IGPGV+ E V + Sbjct: 193 RCGMRPEDISLQYAVLGAEPWSNKTRTEVEARLGVKATNIYGLSEIIGPGVSNEDVSEQR 252 Query: 267 GLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTSLTKEAFPIIRYRTRDLTRLLPGSARP 326 G ++WEDHFYPE++DP TG+VLPDGE G LV +S+T+ A P++RY T D+TRLLP Sbjct: 253 GSYLWEDHFYPEILDPDTGEVLPDGEWGVLVLSSMTRTALPVLRYWTGDITRLLPAQNGT 312 Query: 327 G--MRRMEKVTGRSDDMIILRGVNVFPTQIEEALLATDWCGGHFVIELTREGRMDEMTVL 384 G MRRM+++ GRSDD+IILRGVNV+PTQ+E LL H+ + LTR G MD++T+ Sbjct: 313 GRTMRRMDQIRGRSDDLIILRGVNVYPTQLEAVLLGMGQASPHYHVILTRTGIMDDLTLQ 372 Query: 385 AEARPESWDGEGLVVHAEKVSAFIKNTIGISTRVRVVAPETLERSL-GKAKRVYDKR 440 EA ES +++ IK +G++ R + P +L RS GK +RV D R Sbjct: 373 IEALSES------AALRQEIERQIKAQVGVTVRCELHVPGSLPRSEGGKLRRVTDLR 423 >MTH1855 [H] COG1541 Coenzyme F390 synthetase Mth Methanothermobacter thermautotrophicus Length = 433 Score = 428 bits (1101), Expect = e-119, Method: Compositional matrix adjust. Identities = 219/427 (51%), Positives = 287/427 (67%), Gaps = 9/427 (2%) Query: 20 AERASRDEIMALQTRRLAWSLKHAYDNVAHYRKAFDAAGVHPSDFRQLPDLAKFPFTVKT 79 AE S++E LQ RRL ++K AY+NV +Y K AGV P D L D+ K PFT K Sbjct: 7 AECMSQEEKQELQLRRLQNTVKRAYENVPYYNKRLRDAGVFPEDIETLDDIEKLPFTTKN 66 Query: 80 DLRDNYPFNMFAVPREQLVRVHASSGTTGKPIVVGYTRADIDTWADVMARSIRAAGGRTG 139 DLR+ YPF MFAVP E++V VH SSGTTGKP+V GYT D++ W++VMAR++ Sbjct: 67 DLREAYPFGMFAVPDEEIVEVHTSSGTTGKPVVSGYTSRDLEIWSEVMARALTMGMATRK 126 Query: 140 MLMHNAYGYGLFTGGLGAHYGAERLGCTVIPISGGMTERQVQLVNDFRPDIITVTPSYML 199 + N YGYGLFTGGLG HYGA+++G TVIPIS G T+RQ++++ DF +IT TPSY L Sbjct: 127 DRIQNCYGYGLFTGGLGVHYGAQKIGATVIPISAGNTKRQIEIMQDFGTTVITCTPSYAL 186 Query: 200 AILDEFKRQGLDPRKSSLKFGIFGAEPWTNAMRVEIEQAFDMDATDIYGLSEVIGPGVAQ 259 + + +++G+D + +LK GIFGAE WT MR IE + A +IYGL+E+IGPGVA Sbjct: 187 YLAEVLEKEGVDIGELNLKSGIFGAEMWTEEMRETIEARLGLTALNIYGLTEIIGPGVAM 246 Query: 260 ECVETKDGLHIWEDHFYPEVIDPLTGKVLPDGEKGELVFTSLTKEAFPIIRYRTRDLTRL 319 EC E K+GLHI EDHFYPE+IDP TG+ LP+G KGELV T+LT+E P++R+RT+D+T L Sbjct: 247 ECTE-KNGLHIAEDHFYPEIIDPKTGEKLPNGTKGELVLTTLTREGMPVLRFRTKDITAL 305 Query: 320 LPGSARPG--MRRMEKVTGRSDDMIILRGVNVFPTQIEEALLATDWCGGHFVIELTREGR 377 G G + RM+++TGRSDDM+ +RGV VFP+QIE ALL H+ I +TR Sbjct: 306 RDGECGCGRTLVRMDRITGRSDDMLKIRGVIVFPSQIERALLKIKGLEPHYQIVVTRPEF 365 Query: 378 MDEMTVLAEARPESWDGEGLVVHAEK----VSAFIKNTIGISTRVRVVAPETLERSLGKA 433 +DE+ V EA PE + E V H E+ + I + IG+ V +V P +L RS GKA Sbjct: 366 LDELEVQVEASPELFSDE--VKHVEEAKRMIEKHIHSEIGLRVNVTLVEPGSLPRSEGKA 423 Query: 434 KRVYDKR 440 RV DKR Sbjct: 424 IRVIDKR 430