BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0025.p (406 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMa1898_1 [R] COG1073 Hydrolases of the alpha/beta superfamily S... 296 6e-80 Cgl1404_1 [R] COG1073 Hydrolases of the alpha/beta superfamily C... 216 5e-56 SMa1898_2 [O] COG1765 Predicted redox protein, regulator of disu... 159 2e-38 PA1203 [O] COG1765 Predicted redox protein, regulator of disulfi... 106 1e-22 CC2998 [O] COG1765 Predicted redox protein, regulator of disulfi... 105 2e-22 >SMa1898_1 [R] COG1073 Hydrolases of the alpha/beta superfamily Sme Sinorhizobium meliloti Length = 252 Score = 296 bits (758), Expect = 6e-80, Method: Compositional matrix adjust. Identities = 144/247 (58%), Positives = 184/247 (74%) Query: 4 ERFQFTGVGGHQLAAALDTPDGPIKAYALFAHCFTCGKDVLAAKRIAVALAAKGIATLRF 63 +R QF+G G L+A LD P+GP++AYALFAHCFTC +D+ AA++I LA +GIA LRF Sbjct: 6 QRLQFSGHSGATLSARLDLPNGPLRAYALFAHCFTCSRDLAAARQIGAELAREGIAVLRF 65 Query: 64 DFTGLGSSEGEFANSTFSSNVADLVRAADHLRETRKAPAILIGHSLGGAAILAAAGQIPE 123 DFTGLGSSEGEFA++ FSSNVADL+ AAD+LR +APA+LIGHSLGGAA+LA AG+IPE Sbjct: 66 DFTGLGSSEGEFASTNFSSNVADLLSAADYLRHHYQAPAVLIGHSLGGAAVLAVAGEIPE 125 Query: 124 AKAVATIAAPSDPVHVTHFFKDRIEDIRAQGEGEVSLAGRPFRIKREFLDDVAEQNLMAQ 183 +AVATI AP+D HV F +E+I GE +V LAGR F I+++F++D + Sbjct: 126 VRAVATIGAPADVGHVLKNFGASLEEIDKNGEADVDLAGRTFLIRKQFVEDTRAHRIKDA 185 Query: 184 VKQLHKALLIMHSPTDDTVGIDNATHIFSAARHPKSFVSLADADHLLSGKQDAAYVADVI 243 V +L K +LI+H+P D TVGI+NAT IF AARHPKSF+SL ADHLL+ +DAA+ +I Sbjct: 186 VGRLKKPILILHAPLDHTVGIENATEIFVAARHPKSFISLDKADHLLTDPEDAAFAGRII 245 Query: 244 GAWAERY 250 W RY Sbjct: 246 SEWLTRY 252 >Cgl1404_1 [R] COG1073 Hydrolases of the alpha/beta superfamily Cgl Corynebacterium glutamicum Length = 252 Score = 216 bits (551), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 122/236 (51%), Positives = 152/236 (64%) Query: 16 LAAALDTPDGPIKAYALFAHCFTCGKDVLAAKRIAVALAAKGIATLRFDFTGLGSSEGEF 75 +AA LD PD AYA+FAHCFT + AA R++ LA G+A LRFDF GL SEG+F Sbjct: 1 MAATLDLPDTDPIAYAMFAHCFTGSRFTPAAARVSKTLAESGVACLRFDFPGLSQSEGDF 60 Query: 76 ANSTFSSNVADLVRAADHLRETRKAPAILIGHSLGGAAILAAAGQIPEAKAVATIAAPSD 135 + +TF+SNV D+V A+ L E AP +LIGHSLGGAA L AA +I KAVATI AP D Sbjct: 61 SKTTFNSNVDDIVAASQWLTEHYSAPQLLIGHSLGGAASLKAATKISCLKAVATIGAPFD 120 Query: 136 PVHVTHFFKDRIEDIRAQGEGEVSLAGRPFRIKREFLDDVAEQNLMAQVKQLHKALLIMH 195 P H F DRI D+ QG + L GR I REFL+D+AE N +++L K LL++H Sbjct: 121 PAHAVLHFADRICDVDDQGAVTLQLGGRDVTISREFLEDLAEVNPEDHLRRLRKPLLLLH 180 Query: 196 SPTDDTVGIDNATHIFSAARHPKSFVSLADADHLLSGKQDAAYVADVIGAWAERYV 251 SPTD TVG+DNA IF R+PKS ++L ADHLL+ A A +I W E Y+ Sbjct: 181 SPTDQTVGVDNAQLIFRVTRYPKSLMTLDKADHLLTKDGTAQRAARIIANWVEPYL 236 >SMa1898_2 [O] COG1765 Predicted redox protein, regulator of disulfide bond formation Sme Sinorhizobium meliloti Length = 156 Score = 159 bits (401), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 82/152 (53%), Positives = 108/152 (71%), Gaps = 7/152 (4%) Query: 258 AADT--GTAP-RNVVVQETRAGKFQQIVTAGPHRMLADEPVAVGGQDSGPGPYDFVLAGL 314 AADT G P +V V+ET GKFQ + AG HR+ ADEP +VGG D+GP PYDF+ L Sbjct: 2 AADTPQGAGPIEHVHVRETGEGKFQNAIQAGGHRLFADEPESVGGLDAGPSPYDFLAIAL 61 Query: 315 GACTSMTMRMYADRKSLPLDRVTVTLTHSKIYAKDCEEC-ETREG---MLDQIDRVIRIE 370 GACTSMT+R+YA K L L R+ V ++H+KI+AKDCEEC ET G +D+ +RVI IE Sbjct: 62 GACTSMTLRLYAGHKQLKLGRIGVDVSHTKIHAKDCEECTETERGDSRKIDRFERVISIE 121 Query: 371 GELDADQRKRLMEIADKCPVHKTLTSEIRIVT 402 GE+ + R++++EIA KCPVH+TL + +I T Sbjct: 122 GEVSEELREKIVEIAGKCPVHRTLETVAKIET 153 >PA1203 [O] COG1765 Predicted redox protein, regulator of disulfide bond formation Pae Pseudomonas aeruginosa Length = 135 Score = 106 bits (264), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 77/117 (65%), Gaps = 8/117 (6%) Query: 287 HRMLADEPVAVGGQDSGPGPYDFVLAGLGACTSMTMRMYADRKSLPLDRVTVTLTHSKIY 346 H+ L+D P A+GG DSGP P++ +L+ LGACT++T+ MYA RK PL+ + V L Sbjct: 24 HQWLSDVPAALGGGDSGPSPHEILLSALGACTAITVAMYAQRKEWPLEGIDVQL------ 77 Query: 347 AKDCEECETREGMLDQIDRVIRIEGELDADQRKRLMEIADKCPVHKTLTSEIRIVTK 403 + E T+ I R IR+ G+LDA+QR+RL+EIA+ CP+H+ L+ E+ + ++ Sbjct: 78 --NIVEERTKPEPFTHIRRDIRLAGDLDAEQRQRLLEIANACPIHRVLSGEVSVSSQ 132 >CC2998 [O] COG1765 Predicted redox protein, regulator of disulfide bond formation Ccr Caulobacter vibrioides Length = 158 Score = 105 bits (263), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 53/130 (40%), Positives = 82/130 (63%), Gaps = 9/130 (6%) Query: 276 GKFQQIVTAGPHRMLADEPVAVGGQDSGPGPYDFVLAGLGACTSMTMRMYADRKSLPLDR 335 G Q VTAGP ++AD A GG D GP P++ V AGL ACT+MT+R+YA++K + Sbjct: 36 GGLQTFVTAGPATIVADLSAAQGGLDLGPDPHELVAAGLAACTTMTLRLYANQKGWDISG 95 Query: 336 VTVTLTHSKIYAKDCEECETREGMLDQIDRVIRIEGELDADQRKRLMEIADKCPVHKTLT 395 + H ++++ +E E + +R+I +EG+L +QR+RL +IA+KCP+HK LT Sbjct: 96 L-----HVEVFSSFDKETTPHE----RFERIITLEGDLTDEQRERLFQIAEKCPIHKLLT 146 Query: 396 SEIRIVTKAA 405 + ++VT A Sbjct: 147 AGAKVVTTVA 156