BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0243.0020.p         (210 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CC2204 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib...    82   1e-15
CC2339 [K] COG1309 Transcriptional regulator Ccr Caulobacter vib...    79   8e-15
CAC2773 [K] COG1309 Transcriptional regulator Cac Clostridium ac...    70   2e-12

>CC2204 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides
          Length = 215

 Score = 81.6 bits (200), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 55/180 (30%), Positives = 86/180 (47%), Gaps = 9/180 (5%)

Query: 10  KTYHHGDLREALIQAALGEVELGGPEAISIKALAKQLGVSQPAPYRHFADREALLEAVTA 69
           + YHHGDL  ALI AA   +E  GP A+S++A+A++ GVS  APY HF D+  LLEAV  
Sbjct: 15  RPYHHGDLSRALIDAARKILETEGPAALSLRAVAREAGVSPAAPYHHFKDKAELLEAVAH 74

Query: 70  EAFRQFNVIMREAI-EQSGKGSKLSRFAQAALAFGLERHGIYRLMFA-SRTMACAPKGSE 127
           E + + +  + +A  E      +++    A + F  +   +YR+M+  SR     P   +
Sbjct: 75  EGWHELDAALSKARGETDNARDQMTNLGVAYVCFARDNPALYRVMYDRSRDKDALPDQLK 134

Query: 128 LHTAAMETLALLIESFEAPAVGLLRERQALKIWAGLHGIVMLAE-------QGLLTGESA 180
              A  +    + E+    A  +  E   +  W   HG+  +         + LL GE A
Sbjct: 135 DDGAYCQVRDTIAENSGGRATEIDLELATIAAWCAGHGLAEMISFKQFAPLKDLLGGEEA 194


>CC2339 [K] COG1309 Transcriptional regulator Ccr Caulobacter vibrioides
          Length = 199

 Score = 78.6 bits (192), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 53/161 (32%), Positives = 80/161 (49%), Gaps = 8/161 (4%)

Query: 16  DLREALIQAALGEVELGGPEAISIKALAKQLGVSQPAPYRHFADREALLEAVTAEAFRQF 75
           DLREA ++ AL  +E  G E +S++ +A++LGVS  APYRHF  R+ +L  V A AF +F
Sbjct: 7   DLREACLKEALAIIEHEGVERLSLRDVARRLGVSHQAPYRHFPSRDHILAEVVARAFEEF 66

Query: 76  NVIMREAIEQSGKGSKLSRFAQAALAFGLERHGIYRLMFASRTMACAPKGSELHTAAMET 135
              +    + S     +    +A LA+  +    Y+LMFA+  +       E+   A   
Sbjct: 67  ARHLDAHPKSSDPDRDMGLMGEAYLAYAAKHPLQYQLMFAT-PLPSTDTHPEMMAKARHA 125

Query: 136 LALLIESFEAPAVGLLRE-------RQALKIWAGLHGIVML 169
             +L+ +    A    R          AL IW+GLHG+ ML
Sbjct: 126 FDMLLSALRRKAAEQGRSLAEEAIVLDALFIWSGLHGLAML 166


>CAC2773 [K] COG1309 Transcriptional regulator Cac Clostridium
           acetobutylicum
          Length = 204

 Score = 70.5 bits (171), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/208 (25%), Positives = 99/208 (47%), Gaps = 25/208 (12%)

Query: 12  YHHGDLREALIQAALGEVELGGPEAISIKALAKQLGVSQPAPYRHFADREALLEAVTAEA 71
           YHHG+L++ +I+  L  +   G EA S++ +AK  GVS  APY+HF +++ L+ A+  EA
Sbjct: 6   YHHGNLKKDMIKNGLQLLTTEGYEAFSLRKVAKMCGVSHTAPYKHFKNKDELISAIIFEA 65

Query: 72  FRQFNVIMRE-AIE-QSGKGSKLSRFAQAALAFGLERHGIYRLMFA----------SRTM 119
            ++F   + E +I+ Q    +++    +  + F +E    ++++F            ++M
Sbjct: 66  TQKFKKSLEETSIKYQHDFKTQVIEVGKRYIQFMVENPDYFKVLFINNLNNKIIIQDKSM 125

Query: 120 ACAPKGS--ELHTAAMETLALLIESFEAPAVGLLRERQALKIWAGLHGIVMLAEQGLLTG 177
            C    S       A   L+ L   +    + L      L IW+ +HG+       LL+ 
Sbjct: 126 LCIQGDSFNPFKNTASSYLSSLKTEYSDKDLNL----SILSIWSTIHGLA-----ALLSN 176

Query: 178 ESAQISRE--ELLDEIVEQTKAALTVAL 203
           ++   S +  EL + I+ +    +T +L
Sbjct: 177 KTIIYSGDYLELAENIIRKNLNCITDSL 204