BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0243.0007.p (243 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value APE2524 [E] COG0411 ABC-type branched-chain amino acid transport... 237 1e-62 DR2119 [E] COG0411 ABC-type branched-chain amino acid transport ... 194 1e-49 alr2539 [E] COG0411 ABC-type branched-chain amino acid transport... 193 2e-49 BMEII0874_3 [E] COG0411 ABC-type branched-chain amino acid trans... 193 2e-49 RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport... 190 2e-48 >APE2524 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Ape Aeropyrum pernix Length = 242 Score = 237 bits (605), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 121/236 (51%), Positives = 164/236 (69%) Query: 1 MTALLETRGVWQRFGGLVANSDVSISVGRGEIVGLIGPNGAGKSTLFNLIAGVLPPTQGS 60 +T +L+ R V++RFGG+ A VS SV RGE VGLIGPNGAGK+TLFN+I+G+ P +G Sbjct: 4 VTIILDVRDVYKRFGGIEALKGVSFSVRRGERVGLIGPNGAGKTTLFNIISGIYMPDRGR 63 Query: 61 IIFDGEDVTKLPAAERCQRGVGRTFQVVKSFETMTVIDNVIVGALIRNTKMRIARQKAYE 120 +I+ G D+T PA R + G+ RTFQ+V+ +TV++NVIVGAL+R +R AR++A E Sbjct: 64 VIYKGVDITGWPAYRRSRAGIARTFQIVRPLANLTVLNNVIVGALLRTNDIREARERAME 123 Query: 121 VLEFCGLAARADKLAADLVPSEKRRLEVARALATEPKLLLLDEVLTGLTPVEAQTGVELV 180 ++ GLA + D LA DL EK+RLE+ARALAT+P+LLLLDE+ GL P E V + Sbjct: 124 AIDMVGLAGKEDILAKDLNLIEKKRLELARALATQPELLLLDEIAAGLRPREVDDLVYTL 183 Query: 181 RKVRAAGITVLMVEHVMEIVMPLVDRAIVLNLGKVLVEGKPTEVVRNPEVISAYLG 236 ++ GIT++MVEHVM VM +R IVL+ G+ + EG P EV N VI AY+G Sbjct: 184 LEISKRGITIIMVEHVMRAVMNFAERVIVLHFGEKIAEGTPREVASNKLVIEAYMG 239 >DR2119 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Dra Deinococcus radiodurans Length = 259 Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 109/249 (43%), Positives = 155/249 (62%), Gaps = 16/249 (6%) Query: 3 ALLETRGVWQRFGGLVANSDVSISVGRGEIVGLIGPNGAGKSTLFNLIAGVLPPTQGSII 62 A+L+ R + +RFGGLVA +DVS V GEI GLIGPNGAGK+TLFNL+ G+ PP+ G++ Sbjct: 10 AILQARNMTRRFGGLVAVNDVSFDVREGEIFGLIGPNGAGKTTLFNLMTGLTPPSSGTLT 69 Query: 63 FDGEDVTKLPAAERCQRGVGRTFQVVKSFETMTVIDNVIVGALIRNTKM----------- 111 G+ VT L G+ RTFQ ++ F ++ ++NV V A R T Sbjct: 70 SRGQTVTGLSPHRVAGLGISRTFQNIRLFRGLSALENVKV-ATHRQTHAGLWQGIFGADR 128 Query: 112 ---RIARQKAYEVLEFCGLAARADKLAADLVPSEKRRLEVARALATEPKLLLLDEVLTGL 168 R ++A+E+L+ GL+ RA +LAA+ ++R+LE+ARALATEP++LLLDE G+ Sbjct: 129 AEERQVERRAWELLDLVGLSDRAGELAANFSYGDQRKLEIARALATEPRILLLDEPAAGM 188 Query: 169 TPVEAQTGVELVRKVRAA-GITVLMVEHVMEIVMPLVDRAIVLNLGKVLVEGKPTEVVRN 227 E +R+VR +TVL++EH + +VM L DR VLN G+++ G P V R+ Sbjct: 189 NTAEKGQLTAFIREVRDRFDLTVLLIEHHVPLVMGLCDRVAVLNFGELIAIGDPASVQRD 248 Query: 228 PEVISAYLG 236 P+VI AYLG Sbjct: 249 PKVIEAYLG 257 >alr2539 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Nos Nostoc sp. PCC 7120 Length = 259 Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/251 (40%), Positives = 159/251 (63%), Gaps = 18/251 (7%) Query: 4 LLETRGVWQRFGGLVANSDVSISVGRGEIVGLIGPNGAGKSTLFNLIAGVLPPTQGSIIF 63 +LE + + +RFGGLVA ++VS +V EI GLIGPNGAGK+TLFNLI ++PP+ G +I+ Sbjct: 9 ILEAKSLTRRFGGLVAVNNVSFTVNHYEIFGLIGPNGAGKTTLFNLITALIPPSSGELIY 68 Query: 64 DGEDVTKLPAAERCQRGVGRTFQVVKSFETMTVIDNVIVGALIRNTKMRI---------- 113 + + KL + G+ RTFQ ++ F ++ ++NVI+ + +TK I Sbjct: 69 QNKAIAKLRPHQIASLGIARTFQNIRLFGELSALENVIIARHL-HTKSTIFTGVLGLPPA 127 Query: 114 ------ARQKAYEVLEFCGLAARADKLAADLVPSEKRRLEVARALATEPKLLLLDEVLTG 167 +R+KA E+LE GL+ RA + A + ++RRLE+ARALA EP++LLLDE G Sbjct: 128 PKEESRSREKALELLEMVGLSDRAQEKARNFAYGDQRRLEIARALALEPQILLLDEPAAG 187 Query: 168 LTPVEAQTGVELVRKVRA-AGITVLMVEHVMEIVMPLVDRAIVLNLGKVLVEGKPTEVVR 226 + P E Q + +R++R +T++++EH + +VM L DR VL+ G+++ G+P+ V Sbjct: 188 MNPSEKQQLSDFIREIRDRFNLTIILIEHHVPLVMGLCDRIAVLDFGQLIALGEPSVVRN 247 Query: 227 NPEVISAYLGD 237 +P VI AYLG+ Sbjct: 248 DPAVIEAYLGN 258 >BMEII0874_3 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Bme Brucella melitensis Length = 271 Score = 193 bits (491), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 102/241 (42%), Positives = 154/241 (63%), Gaps = 5/241 (2%) Query: 4 LLETRGVWQRFGGLVANSDVSISVGRGEIVGLIGPNGAGKSTLFNLIAGVLPPTQGSIIF 63 +L + + + FGGL +VS ++ GE++GLIGPNGAGK+TLFN+I+G L P +G++ Sbjct: 28 ILRVQNLNKHFGGLHVTRNVSFTLREGEVLGLIGPNGAGKTTLFNMISGFLAPDEGTVNL 87 Query: 64 DGED----VTKLPAAERCQRGVGRTFQVVKSFETMTVIDNVIVGALIRNTKMRIARQKAY 119 G D K PA + G+GRTFQ+V+ F MTV +N++VGA R+ + AR+ A Sbjct: 88 CGADGQFHAPKNPA-DFAALGLGRTFQIVQPFAAMTVEENIMVGAFYRHHHEKDAREAAR 146 Query: 120 EVLEFCGLAARADKLAADLVPSEKRRLEVARALATEPKLLLLDEVLTGLTPVEAQTGVEL 179 E GL A L +RLEVAR +A EP++LLLDEV+ G+ + + ++L Sbjct: 147 ETAWRMGLGPLLGAEARGLTIGGLKRLEVARVMAMEPRILLLDEVMAGINQTDVRRAIDL 206 Query: 180 VRKVRAAGITVLMVEHVMEIVMPLVDRAIVLNLGKVLVEGKPTEVVRNPEVISAYLGDRH 239 + +R +G++++ +EHVM+ VM L DR IVL G+V+ +G+P +VVR+P+V+ AYLG Sbjct: 207 MLSIRDSGVSIIAIEHVMQAVMSLSDRVIVLASGEVIAQGRPQDVVRDPQVVEAYLGKEF 266 Query: 240 A 240 A Sbjct: 267 A 267 >RSc2438 [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component Rso Ralstonia solanacearum Length = 257 Score = 190 bits (483), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 105/248 (42%), Positives = 149/248 (60%), Gaps = 15/248 (6%) Query: 4 LLETRGVWQRFGGLVANSDVSISVGRGEIVGLIGPNGAGKSTLFNLIAGVLPPTQGSIIF 63 LL RGV +RFGGL A SDVS+ + GEI GLIGPNGAGK+T FN+I G+ P G + Sbjct: 6 LLSIRGVNKRFGGLQALSDVSLEIREGEIYGLIGPNGAGKTTFFNVITGLYTPDAGEFVL 65 Query: 64 DGEDVTKLPAAERCQRGVGRTFQVVKSFETMTVIDNVIVGALIRNT--------KMRIAR 115 G+ E + G+ RTFQ ++ F MT +NV+VG +R + + AR Sbjct: 66 AGQPYQPTAVHEVAKAGIARTFQNIRLFGDMTAAENVMVGRHVRTKAGLIGAVFRTKAAR 125 Query: 116 QK-------AYEVLEFCGLAARADKLAADLVPSEKRRLEVARALATEPKLLLLDEVLTGL 168 ++ A+++L++ G+ A+ A +L +RRLE+ARALAT+PKLL LDE G+ Sbjct: 126 EEEASIEDWAHDLLDYVGIGKYANYTARNLSYGHQRRLEIARALATQPKLLALDEPAAGM 185 Query: 169 TPVEAQTGVELVRKVRAAGITVLMVEHVMEIVMPLVDRAIVLNLGKVLVEGKPTEVVRNP 228 E L+ K+R+ G T+L++EH +++VM L +R VL+ GKV+ +G P EV N Sbjct: 186 NATEKVELRGLLDKIRSDGKTILLIEHDVKLVMGLCNRLTVLDYGKVIAQGLPHEVQSNQ 245 Query: 229 EVISAYLG 236 VI AYLG Sbjct: 246 AVIEAYLG 253