BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0035.p (355 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CC1850 [T] COG2199 FOG Ccr Caulobacter vibrioides 221 2e-57 VCA0956 [T] COG2199 FOG Vch Vibrio cholerae 178 2e-44 BMEII0660 [T] COG3706 Response regulator containing a CheY-like ... 147 3e-35 aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus 144 4e-34 CC2462 [T] COG3706 Response regulator containing a CheY-like rec... 143 7e-34 >CC1850 [T] COG2199 FOG Ccr Caulobacter vibrioides Length = 353 Score = 221 bits (563), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 122/308 (39%), Positives = 178/308 (57%) Query: 33 NYEIWYVYATGYNAPLNKVINETLARSGKLSESDLEQIYETCLSHIKTSDRIDKVGARVI 92 N+E+W Y N L + + ++ ++E E++ T L + +++I G + Sbjct: 35 NFELWTHYVADPNGALARELTRLISLGEPMTELVSEELAATFLPKARLNEQIRDAGDILS 94 Query: 93 GEIDAVMKLITDALGVSATYDASLVGASDKLASATTRDHIKAIVDSLVKSTREMRETNQA 152 E++AV K I +A +A + L GAS L + T IKA+V S+ ++TR + + NQ+ Sbjct: 95 KELEAVSKAIQNAQKSNAAFGQELAGASKSLDTHTDVASIKAVVGSIAEATRRVHKENQS 154 Query: 153 LENRLALSKSEISDLQHSLEAIRAESLTDPLTGLGNRKYFDRSIDMAVQAALASGEPLSL 212 LE RLA S +E+ L+ LE +R ++ TD LT L NRK FD +D A A G + L Sbjct: 155 LEARLADSTAEVERLREHLEQVRRDATTDGLTNLANRKAFDDELDRACAEAEEGGTTICL 214 Query: 213 LMFDIDHFKSFNDSYGHLTGDQVLRLVAQSLKQNIKGQDITARYGGEEFAVVLPNTALRQ 272 + DIDHFK FND++GH TGDQV+R VA + + ARYGGEEFA++ P A Sbjct: 215 AVLDIDHFKGFNDTWGHQTGDQVIRYVASVIGRVAAPPRFAARYGGEEFAMIFPREAASV 274 Query: 273 ALTVADHIRRAVMAKELKKKSTGEILGRVTISVGVSMLKPSDDTDSLIERADACLYAAKR 332 T + IR V ++ LK++ST E LG +T+S G + KP + S++ERADA LYA+KR Sbjct: 275 VATTLEEIRVEVSSRMLKRRSTNEDLGAITVSSGFAERKPGESGHSVMERADAALYASKR 334 Query: 333 AGRNRVIC 340 GRNRV Sbjct: 335 GGRNRVTA 342 >VCA0956 [T] COG2199 FOG Vch Vibrio cholerae Length = 339 Score = 178 bits (451), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 108/319 (33%), Positives = 177/319 (55%), Gaps = 17/319 (5%) Query: 29 AVPRNYEIWYVYATGYNAPLNKVINETLARSGKLSESDLEQIYETCLSHIKTSDRIDKVG 88 A P NY +WY Y LN ++ L G + E +Y+ ++ K I+++ Sbjct: 28 ATPVNYALWYTYVDQAIPQLNAEMDSVLKNFGLCPPASGEHLYQQYIA-TKAETNINQLR 86 Query: 89 ARV---IGEIDAVMKLITDALGVSATYDASLVGASDKLASATTRDH-----IKAIVDSLV 140 A V +GEI + M +D L ++++ A+++ S K +D+ + ++ LV Sbjct: 87 ANVEVLLGEISSSM---SDTLSDTSSF-ANVIDKSFKDLERVEQDNLSIEEVMTVIRRLV 142 Query: 141 KSTREMRETNQALENRLALSKSEISDLQHSLEAIRAESLTDPLTGLGNRKYFDRSIDMAV 200 ++++R + L N+L + EIS L+ L ++ ++L D L+GL NR+ FD + + Sbjct: 143 SDSKDIRHSTNFLNNQLNAATLEISRLKEQLAKVQKDALFDSLSGLYNRRAFDGDMFTLI 202 Query: 201 QAALASGEPLSLLMFDIDHFKSFNDSYGHLTGDQVLRLVAQSLKQNIKGQDITARYGGEE 260 A G+ +SL+M DIDHFK+ ND+YGHL GDQ++R +A+ L+ + RYGGEE Sbjct: 203 HA----GQQVSLIMLDIDHFKALNDNYGHLFGDQIIRAIAKRLQSLCRDGVTAYRYGGEE 258 Query: 261 FAVVLPNTALRQALTVADHIRRAVMAKELKKKSTGEILGRVTISVGVSMLKPSDDTDSLI 320 FA++ P+ +LR A A+ +RR++ +K + +G+ +G +T S GV D +SLI Sbjct: 259 FALIAPHKSLRIARQFAESVRRSIEKLTVKDRRSGQSVGSITASFGVVEKIEGDSLESLI 318 Query: 321 ERADACLYAAKRAGRNRVI 339 RAD LY AK GRNRV+ Sbjct: 319 GRADGLLYEAKNLGRNRVM 337 >BMEII0660 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Bme Brucella melitensis Length = 461 Score = 147 bits (372), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 75/177 (42%), Positives = 115/177 (64%), Gaps = 2/177 (1%) Query: 167 LQHSLEAIRAESLTDPLTGLGNRKYFDRSIDMAVQAALASGEPLSLLMFDIDHFKSFNDS 226 L+ S+E +S+TD LTGL NR+Y D + + + A+ +PLS++M D+DHFK N+ Sbjct: 285 LRQSMERTITQSVTDGLTGLHNRRYIDMHMPLLLTRAIERKQPLSIIMIDLDHFKQVNEQ 344 Query: 227 YGHLTGDQVLRLVAQSLKQNIKGQDITARYGGEEFAVVLPNTALRQALTVADHIRRAVMA 286 YGH GD VLR + L++NI+G D+ +RYGGEEF VVLP+T + A VA+ + R ++A Sbjct: 345 YGHGAGDHVLREFSGRLRRNIRGMDLISRYGGEEFVVVLPDTDRQAAFNVAERV-RGIVA 403 Query: 287 KELKKKSTGEILGRVTISVGVSMLKPSDDT-DSLIERADACLYAAKRAGRNRVICEA 342 + G+ +T+SVGV+ L+P+ D+ ++L RA L AK++GRNR++ A Sbjct: 404 EAPFVLDDGKRRASLTVSVGVAALRPAGDSLEALFTRATDALIQAKQSGRNRIVLSA 460 >aq_035_2 [T] COG2199 FOG Aae Aquifex aeolicus Length = 251 Score = 144 bits (362), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 74/161 (45%), Positives = 104/161 (64%), Gaps = 2/161 (1%) Query: 178 SLTDPLTGLGNRKYFDRSIDMAVQAALASGEPLSLLMFDIDHFKSFNDSYGHLTGDQVLR 237 +LTDPLTGL NR+ F + + A G S+LM DID+FK ND+YGH GD VL+ Sbjct: 84 ALTDPLTGLYNRRVFTEMAEKELAKAKRYGYNFSILMIDIDNFKKINDTYGHDVGDLVLK 143 Query: 238 LVAQSLKQNIKGQDITARYGGEEFAVVLPNTALRQALTVADHIRRAVMAKELKKKSTGEI 297 +++ LK+N++G D+ AR+GGEEF V+L NT L A+ A+ +RR + + + GE Sbjct: 144 KISEILKRNVRGADLVARFGGEEFIVMLSNTNLNGAVKKAEQLRRMIEQTPI-ELPNGEK 202 Query: 298 LGRVTISVGVSMLKPSDDTDSLIERADACLYAAKRAGRNRV 338 L RVT+S+GVS + + + LI+ AD LY AKR G+NRV Sbjct: 203 L-RVTVSIGVSTYRGHESLEELIKEADQALYEAKRKGKNRV 242 >CC2462 [T] COG3706 Response regulator containing a CheY-like receiver domain and a GGDEF domain Ccr Caulobacter vibrioides Length = 454 Score = 143 bits (360), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 80/179 (44%), Positives = 111/179 (62%), Gaps = 6/179 (3%) Query: 165 SDLQHSLEAIRAESLTDPLTGLGNRKYFDRSIDMAVQAALASGEPLSLLMFDIDHFKSFN 224 ++L HSLE ++TD LTGL NR+Y +D V+ A G+P+S L+ DID FK N Sbjct: 280 NNLDHSLEL----AVTDQLTGLHNRRYMTGQLDSLVKRATLGGDPVSALLIDIDFFKKIN 335 Query: 225 DSYGHLTGDQVLRLVAQSLKQNIKGQDITARYGGEEFAVVLPNTALRQALTVADHIRRAV 284 D++GH GD+VLR A L N++ D+ RYGGEEF V++P+TAL AL +A+ IR V Sbjct: 336 DTFGHDIGDEVLREFALRLASNVRAIDLPCRYGGEEFVVIMPDTALADALRIAERIRMHV 395 Query: 285 MAKELKKKSTGEILGRVTISVGVSMLKPSDDT-DSLIERADACLYAAKRAGRNRVICEA 342 E+L VTIS+GVS DT ++L++RAD +Y AK +GRN V+ +A Sbjct: 396 SGSPFTVAHGREMLN-VTISIGVSATAGEGDTPEALLKRADEGVYQAKASGRNAVVGKA 453