BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0242.0027.p (221 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGpA330 [E] COG0765 ABC-type amino acid transport system, permea... 146 3e-35 BH1462 [E] COG0765 ABC-type amino acid transport system, permeas... 135 8e-32 TM0592 [E] COG0765 ABC-type amino acid transport system, permeas... 131 1e-30 Cj0940c [E] COG0765 ABC-type amino acid transport system, permea... 129 4e-30 DR2277 [E] COG0765 ABC-type amino acid transport system, permeas... 129 6e-30 >AGpA330 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 216 Score = 146 bits (369), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/218 (38%), Positives = 129/218 (59%), Gaps = 6/218 (2%) Query: 1 MQSYSFRWDVIPNNLGFLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFARIIALS 60 M+ +SF ++L FLA+ +E T ++ + L LGL +AI + S R+IA + Sbjct: 1 MRQFSF------SDLLFLATALEWTFLMAAIALAFGVPLGLALAIARTSGSTVLRVIASA 54 Query: 61 VGEIVRNTPILVQLLWVYYVLPIVFNVRIDALAASILGLSLYSAVFISEVFRAGIQTVPV 120 E+++ P+L L++ Y+ +P++ + + A ++Y+AVF+ +++R GIQ V Sbjct: 55 FVELIQGIPLLGLLMFFYFGIPVLAGKDVPTVVAVGAAYTIYTAVFLGDIWRGGIQAVRQ 114 Query: 121 GHREAAQVLGLTPAQSFVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGEVTRRGM 180 EA LGL+ Q FV I+GPQA R LP VQLIK +SLASVV + E+ R G Sbjct: 115 AQWEAGACLGLSWLQQFVHIIGPQAFRIALPATVGFLVQLIKNTSLASVVGLVELARAGQ 174 Query: 181 ELSSSTFRPLEIFTFIAVVYFAICWPLTHSIRIWEARL 218 +S+ TF+PL ++T +A +YF IC+PLT R EARL Sbjct: 175 MISAGTFQPLLVYTLVAAIYFTICFPLTTWSRTLEARL 212 >BH1462 [E] COG0765 ABC-type amino acid transport system, permease component Bha Bacillus halodurans Length = 218 Score = 135 bits (339), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 82/216 (37%), Positives = 125/216 (57%), Gaps = 1/216 (0%) Query: 5 SFRWDVIPNNLGFLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFARIIALSVGEI 64 SF + I + F+ G+ +TL V+L+ +LG+V+AI ++S++R R A I Sbjct: 2 SFDFSRIQPFMPFMLEGVWVTLQFVSVSLLFGLVLGIVLAIFKISKYRLFRWFADFYTSI 61 Query: 65 VRNTPILVQLLWVYYVLPIVFNVRIDALAASILGLSLYSAVFISEVFRAGIQTVPVGHRE 124 R TP+++QLL +Y LP F V I A+ L L SA ++SE+ RAGIQ V G RE Sbjct: 62 FRGTPLILQLLMIYLALP-QFGVDISQFQAAFLAFGLNSAAYVSEIIRAGIQAVDKGQRE 120 Query: 125 AAQVLGLTPAQSFVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGEVTRRGMELSS 184 AA+ LG+ +RI+ PQA+R++LP L F+ L K S++ SV+ V ++ RR S+ Sbjct: 121 AAEALGIPYRPMMLRIILPQAMRNILPALFNEFINLTKESAIVSVIGVTDLMRRAQITSA 180 Query: 185 STFRPLEIFTFIAVVYFAICWPLTHSIRIWEARLAR 220 T+ LE F+ ++Y+ + LT R+ E RL R Sbjct: 181 ETYLYLEPLLFVGLIYYVLVMGLTVIGRLLERRLKR 216 >TM0592 [E] COG0765 ABC-type amino acid transport system, permease component Tma Thermotoga maritima Length = 216 Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 72/210 (34%), Positives = 123/210 (58%), Gaps = 1/210 (0%) Query: 9 DVIPNNLGFLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFARIIALSVGEIVRNT 68 VI +NL L G TL ++ + +++ +G+ + + ++S++R R + E +R T Sbjct: 6 SVIVDNLPLLLKGALRTLQLTSLAVLIGLAIGIFVGMGRLSKYRIIRYPSSVYVEFLRGT 65 Query: 69 PILVQLLWVYYVLPIVFNVRIDALAASILGLSLYSAVFISEVFRAGIQTVPVGHREAAQV 128 P++VQL VY+ LP + D A+++ L + S +++E+ RAGIQ+VP G EAA+ Sbjct: 66 PLMVQLFLVYFGLP-ELGLEFDRFTAAVIALGINSGAYVAEIVRAGIQSVPKGQYEAARS 124 Query: 129 LGLTPAQSFVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGEVTRRGMELSSSTFR 188 LG++ AQ+ + ++ PQA R +LP L F+ L K SSLA V+ E+ R + S TF Sbjct: 125 LGMSHAQAMIYVILPQAFRHILPALGNEFIALAKDSSLAMVIGTVELMRSAQYIVSRTFM 184 Query: 189 PLEIFTFIAVVYFAICWPLTHSIRIWEARL 218 I+ +A++YFAI + ++ ++ E RL Sbjct: 185 SFPIYGGVALIYFAITFSVSRLVKFVEGRL 214 >Cj0940c [E] COG0765 ABC-type amino acid transport system, permease component Cje Campylobacter jejuni Length = 261 Score = 129 bits (324), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 75/221 (33%), Positives = 126/221 (57%), Gaps = 3/221 (1%) Query: 1 MQSYSFRWDVIPNNLGFLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFARIIALS 60 + +Y F + I G TL IS +L+++ +LG V +S F R ++ Sbjct: 43 ISAYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF 102 Query: 61 VGEIVRNTPILVQLLWVYYVLPIVFNVRIDA-LAASILGLSLYSAVFISEVFRAGIQTVP 119 E+VR TP+LVQ+L +YY+ I N+ +D A ++ LS +SA +++E+FRAGI ++ Sbjct: 103 YIELVRGTPLLVQVLLIYYI--IANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS 160 Query: 120 VGHREAAQVLGLTPAQSFVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGEVTRRG 179 + E+A+ LGL Q F ++ PQA++++L L+ F LIK SSL SV++V E+T+ Sbjct: 161 ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQSA 220 Query: 180 MELSSSTFRPLEIFTFIAVVYFAICWPLTHSIRIWEARLAR 220 E++S TF LE + +A+ Y + P++ R E + + Sbjct: 221 QEINSYTFATLEAYVILAITYLVLTLPISIFSRYLERKCQK 261 >DR2277 [E] COG0765 ABC-type amino acid transport system, permease component Dra Deinococcus radiodurans Length = 239 Score = 129 bits (323), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 76/204 (37%), Positives = 123/204 (60%), Gaps = 1/204 (0%) Query: 17 FLASGMEMTLFISIVTLVVATLLGLVIAIMQMSRFRFARIIALSVGEIVRNTPILVQLLW 76 L SG+ +TL +S+ LVV+ ++G + ++++ R I E+VR P++V L Sbjct: 27 LLLSGLGVTLAVSLCALVVSVVVGTALGLVRVYRVPLLGPIGNIYVEVVRGIPLIVLLSV 86 Query: 77 VYYVLPIVFNVRIDALAASILGLSLYSAVFISEVFRAGIQTVPVGHREAAQVLGLTPAQS 136 +Y+ LP + + A++L L LYSA + SE+ R G+ +VP G EAA+ LGL+ Q+ Sbjct: 87 IYFGLP-TLGLTLAGFPAAVLALGLYSAAYTSEIVRGGLGSVPAGQIEAARSLGLSRGQA 145 Query: 137 FVRIVGPQAIRSVLPRLAANFVQLIKYSSLASVVSVGEVTRRGMELSSSTFRPLEIFTFI 196 +V PQA R LP L FV LI SSLAS V++ E+ +G ++++T+R E++ + Sbjct: 146 LRFVVLPQAWRVALPALGNEFVSLILGSSLASAVTLQELFSQGRYITNATYRQFEVYAVL 205 Query: 197 AVVYFAICWPLTHSIRIWEARLAR 220 AV+YF + + LT ++R E RL+R Sbjct: 206 AVIYFVLTFTLTRAVRALEHRLSR 229