BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0242.0014.p         (126 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc3303 [R] COG0679 Predicted permeases Atu Agrobacterium tumefa...   104   5e-23
SMc00317 [R] COG0679 Predicted permeases Sme Sinorhizobium meliloti   104   6e-23
BMEI0560 [R] COG0679 Predicted permeases Bme Brucella melitensis       72   2e-13

>AGc3303 [R] COG0679 Predicted permeases Atu Agrobacterium tumefaciens
           strain C58 (Cereon)
          Length = 312

 Score =  104 bits (259), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 57/125 (45%), Positives = 76/125 (60%), Gaps = 6/125 (4%)

Query: 1   MIDILNLALPYFGLIFIGYACGKAKGLPESGLAWMNFFLLYVSLPALLFGIMSKTPFAEL 60
           M DI+ L LP+FGLIFIGY   +    P   + W+N F++Y +LPAL F ++SKTP  EL
Sbjct: 1   MADIIGLLLPFFGLIFIGYGAARITKQPVEAMGWLNTFIIYAALPALFFKLVSKTPVEEL 60

Query: 61  NNPPFL---IATTLGTVLAFFLAMVAGKVIGGLTLREATLAGLSGAYGNIGYMGPGLALA 117
               F+   +A T G  LA FL    G+ +   +L E T+   + +YGNIGYMGPGLAL 
Sbjct: 61  ARMDFVAASLACTYGIFLAVFLI---GRFVRRNSLAETTIQSFAASYGNIGYMGPGLALL 117

Query: 118 VLGXR 122
            LG +
Sbjct: 118 ALGEK 122


>SMc00317 [R] COG0679 Predicted permeases Sme Sinorhizobium meliloti
          Length = 320

 Score =  104 bits (259), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 54/120 (45%), Positives = 75/120 (62%)

Query: 1   MIDILNLALPYFGLIFIGYACGKAKGLPESGLAWMNFFLLYVSLPALLFGIMSKTPFAEL 60
           M +I  L LP+FGLIF+GY   +    P   + W+N F++Y++LPAL F ++S+TP  EL
Sbjct: 1   MAEITGLVLPFFGLIFLGYLTARLVDHPGEAMGWLNTFIVYLALPALFFKLVSRTPVEEL 60

Query: 61  NNPPFLIATTLGTVLAFFLAMVAGKVIGGLTLREATLAGLSGAYGNIGYMGPGLALAVLG 120
               F++ +   T + F L    G  +   T+ EAT+ G +GAYGNIGYMGPGLAL  LG
Sbjct: 61  TRADFILTSVGTTYVVFALIFAIGLFLRRNTVAEATMQGFAGAYGNIGYMGPGLALLALG 120


>BMEI0560 [R] COG0679 Predicted permeases Bme Brucella melitensis
          Length = 311

 Score = 72.4 bits (176), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/120 (40%), Positives = 69/120 (57%), Gaps = 1/120 (0%)

Query: 1   MIDILNLALPYFGLIFIGYACGKAKGLPESGLAWMNFFLLYVSLPALLFGIMSKTPFAEL 60
           M+  L + LP F LIF G+   K K L    +A +N F++Y++LPALLF IM+ T  +EL
Sbjct: 1   MLTTLIVVLPVFALIFSGWGAFKLKILGPHAIAELNRFVVYLALPALLFDIMANTHGSEL 60

Query: 61  NNPPFLIATTLGTVLAFFLAMVAGKVIGGLTLREATLAGLSGAYGNIGYMGPGLALAVLG 120
             P F+    L + +AF L  +  ++ G L L +  L GL+ AY N GYMG  L++   G
Sbjct: 61  WQPGFIAVFLLSSAVAFALPFLV-RLRGRLPLADTALDGLNAAYPNTGYMGIPLSMIAFG 119