BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0081.p         (288 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGpA52_2 Non COG                                                      156   5e-38
AGpA52_1 [K] COG1475 Predicted transcriptional regulators Atu Ag...   141   2e-33
SMa2147 [K] COG1475 Predicted transcriptional regulators Sme Sin...   102   1e-21
mll8115 Non COG                                                        97   4e-20
msr9757 Non COG                                                        79   2e-14

>AGpA52_2 Non COG
          Length = 169

 Score =  156 bits (394), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 78/160 (48%), Positives = 116/160 (72%)

Query: 126 NVDVASIRRRRKLLDGICAEAVELLKEKHLTLHTFSELRKLGPIRQIEAAELMIAMNNFS 185
           ++D++ I+RRR LLDGIC E +ELLK+K +   TF  LRK+ P+RQIE+AELM+ ++N++
Sbjct: 1   DLDISMIKRRRTLLDGICPEVIELLKDKSVNPVTFDVLRKMRPMRQIESAELMLTVHNWT 60

Query: 186 NSYVRSLVAATPRNQLAAGFTPRQHKGLSDEQLALMERESASLAREFKVAEQTYGVDHLD 245
           +SY ++L+AAT +  LA    P++  GL+ EQ+A MERE ASL ++FK  E++YG D L 
Sbjct: 61  SSYAKALLAATKQEDLAKPDRPKKIGGLTREQMARMEREMASLHQDFKQIEESYGDDILH 120

Query: 246 LVLAVGYLSKLLRNGKVVGYLAKQYQELLFEFQKITEAEA 285
           LV+A GYLSKL+ N ++  +L ++Y E L EF+ I  A +
Sbjct: 121 LVVASGYLSKLVGNSEIERFLTQRYPEFLDEFRAIIVASS 160


>AGpA52_1 [K] COG1475 Predicted transcriptional regulators Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 131

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 93/125 (74%)

Query: 1   MGFEQRTLQVKLADIQPLKLVTEEVKRSAKYRQIAASVAEIGLVEPPVVTRSRDNSAKFL 60
           + FEQ  +++ +  I P K++TE  K++ KY++IA+S++E+G+VEP V++R  +N  KF+
Sbjct: 7   ISFEQAIVELPMTAILPRKIITEAQKKTVKYKRIASSISEVGIVEPIVISRLEENEDKFM 66

Query: 61  LLDGHLRLEILRDRGLSEIECLISTEDEAFTYNKRVNRIAIIQEHRMILKAVENGVSEAR 120
           LLDGH+R  I  DRG + I CLI+ +DE FTYNKRVNR+A +QEH M++KA+ +GV E +
Sbjct: 67  LLDGHIRFTIALDRGATTIRCLIANDDEGFTYNKRVNRLATVQEHYMLIKALNSGVPEEK 126

Query: 121 IAKAL 125
           +AK  
Sbjct: 127 LAKTF 131


>SMa2147 [K] COG1475 Predicted transcriptional regulators Sme Sinorhizobium
           meliloti
          Length = 296

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 53/130 (40%), Positives = 79/130 (60%), Gaps = 1/130 (0%)

Query: 3   FEQRTLQVKLADIQPLKLVTEEVKRSAKYRQIAASVAEIGLVEPPVVTRSRDNSAKFLLL 62
           F++    + ++ I PLK + E  + S K+ Q+ +S+  IGLVE PVV     ++  + LL
Sbjct: 19  FDRDIQTIAISAIVPLKSLPEGARESRKFAQVLSSIKAIGLVEAPVVIADTRSAGTWYLL 78

Query: 63  DGHLRLEILRDRGLSEIECLISTEDEAFTYNKRVNRIAIIQEHRMILKAVENGVSEARIA 122
           DGHLRLE L++ G +E+ECL++ +D+ +T          IQEHRMI +A+E GVS A IA
Sbjct: 79  DGHLRLEALKELGFAEVECLVAIDDDTYTTTS-GQPAGPIQEHRMIARAIERGVSSADIA 137

Query: 123 KALNVDVASI 132
            AL +   S 
Sbjct: 138 DALGLQSPSF 147


>mll8115 Non COG
          Length = 282

 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/169 (34%), Positives = 94/169 (55%), Gaps = 3/169 (1%)

Query: 117 SEARIAKALNVD--VASIRRRRKLLDGICAEAVELLKEKHLTLHTFSELRKLGPIRQIEA 174
            EAR+   +  D  ++  R    L++GIC EA+++L +    L  F  LR++ P RQ+E 
Sbjct: 99  PEARVKAGIGEDRQISLPRVDEPLVEGICLEALDMLNDFGAPLKIFGLLREVVPGRQVEI 158

Query: 175 AELMIAMNNFSNSYVRSLVAATPRNQLAAGFTPRQ-HKGLSDEQLALMERESASLAREFK 233
             LM+AMN       R L+  TPR+QL      R+ ++G+S  Q+A ME + A ++ ++ 
Sbjct: 159 VRLMLAMNRVEFRVARLLIELTPRSQLTNPLARRKRYEGISPAQMAAMEADIAEVSHDYL 218

Query: 234 VAEQTYGVDHLDLVLAVGYLSKLLRNGKVVGYLAKQYQELLFEFQKITE 282
            A  T+G + L+L+ A  Y  +LL N K+V YLA+ +   L  FQ + +
Sbjct: 219 SAASTHGSEMLNLIAATSYFDRLLNNPKLVRYLARNFARQLEVFQNLLD 267


>msr9757 Non COG
          Length = 225

 Score = 78.6 bits (192), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/148 (32%), Positives = 76/148 (51%)

Query: 136 RKLLDGICAEAVELLKEKHLTLHTFSELRKLGPIRQIEAAELMIAMNNFSNSYVRSLVAA 195
           R+ + GIC   +++L++  +    F  L+K+ P RQ+E A LM+AM+    +Y R LVA 
Sbjct: 75  REPIGGICPGVLDVLRDAPVKTKIFGLLQKVLPARQVEIARLMVAMDQVRLTYARMLVAL 134

Query: 196 TPRNQLAAGFTPRQHKGLSDEQLALMERESASLAREFKVAEQTYGVDHLDLVLAVGYLSK 255
           TP+  L   F P     L++     M  E   L+     A +  G   L+LV A  + ++
Sbjct: 135 TPQALLVKDFHPSTIANLTEGHRGAMVLEVGKLSLAVLGAMEQRGQVGLELVAASRFFAR 194

Query: 256 LLRNGKVVGYLAKQYQELLFEFQKITEA 283
           L+ N +VV YLA+ Y     EF  ++E 
Sbjct: 195 LMDNSRVVRYLARNYPGHFEEFHNLSEP 222