BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0241.0077.p         (91 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DR0281 [E] COG0559 Branched-chain amino acid ABC-type transport ...    62   3e-10
DR2121 [E] COG0559 Branched-chain amino acid ABC-type transport ...    59   3e-09
RSp0014 [E] COG0559 Branched-chain amino acid ABC-type transport...    58   5e-09

>DR0281 [E] COG0559 Branched-chain amino acid ABC-type transport system,
          permease components Dra Deinococcus radiodurans
          Length = 285

 Score = 62.0 bits (149), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 40/52 (76%)

Query: 5  VSAQLVNGIAIGMIYALMAFGLSIIKGLLNIPNFAHGALYALGAYLCYSAVS 56
          V  QL N +A+G +YAL+A GL+++ G++ IPNFAHG LY LGAYL Y+ +S
Sbjct: 4  VLQQLFNALALGGVYALVALGLTLVYGVMKIPNFAHGGLYMLGAYLSYAGIS 55


>DR2121 [E] COG0559 Branched-chain amino acid ABC-type transport system,
           permease components Dra Deinococcus radiodurans
          Length = 348

 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 44/107 (41%), Positives = 59/107 (55%), Gaps = 23/107 (21%)

Query: 8   QLVNGIAIGMIYALMAFGLSIIKGLLNIPNFAHGALYALGAYLCYSAVSGGLP------- 60
            LVNG+AIG +YA+ A G ++I  +L I NFA GA++ LGAYL Y+ VSG          
Sbjct: 33  NLVNGLAIGSVYAIFALGYTLIFSILGIINFAQGAVFTLGAYLTYTLVSGQFENNGLLKG 92

Query: 61  ---FPAGLFVA----------FAGAALAGLM---LDRLVVRFVRAGG 91
              FP G  +A            G+ALAGL+   ++RL  R +RA G
Sbjct: 93  INLFPDGSPLAGNPWAFGLATLLGSALAGLIAVVIERLAFRPMRARG 139


>RSp0014 [E] COG0559 Branched-chain amino acid ABC-type transport system,
          permease components Rso Ralstonia solanacearum
          Length = 293

 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 32/78 (41%), Positives = 51/78 (65%), Gaps = 1/78 (1%)

Query: 4  LVSAQLVNGIAIGMIYALMAFGLSIIKGLLNIPNFAHGALYALGAYLCYSAVSG-GLPFP 62
          ++  QLVN +++G +YAL A G +++ G+L + N +HGA++ LGAY     V+   LP  
Sbjct: 1  MLEQQLVNALSLGCVYALFALGFTLVFGILGVINLSHGAVFMLGAYAALQFVAHFELPLW 60

Query: 63 AGLFVAFAGAALAGLMLD 80
          A L V FA + +AGL++D
Sbjct: 61 AALLVGFAASGVAGLIID 78